Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02004 ATGCCCCTTTACGAAGTTCTGGCTCAGGCTGGTGCAAATTCCTCGGAAACAATAACATCATCGTTATCTTCCGGGTCTCACGGTTCAACTGTTGCCGAAGCTGAGGTTTCGGTTTCGTACCGAGGGGTTCGGAGGAGGCCGTGGGGGAAGTACGCCGCAGAGATAAGGGACTCCACCAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCGTTGGCCATGCGAGGCTCCACGGCAGTGCTGAACTTCCCCGCTGAGATGGTTTGGCAATCGCTTCGGAAGATGGAGTATGGCTTTGACCAAGGTTGTTCCCCCGTTCTGGAGTTGAAAAAGAGACACTCCATAAATAGAAAATGGGAGAGGAAGAAGCTGAAGAAGAAGGTGCACGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGTGTCCCAAAATGTGATGGTGTTGGAGGACTTAGGGACAGAGTATTTGGAACATCTTCTGACTCTCTCCCAGGATATCAATGCTTCTTAG 555 0.5117 MPLYEVLAQAGANSSETITSSLSSGSHGSTVAEAEVSVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSTAVLNFPAEMVWQSLRKMEYGFDQGCSPVLELKKRHSINRKWERKKLKKKVHEEDEEEEEEEEERVSQNVMVLEDLGTEYLEHLLTLSQDINAS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02004 184 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lapu6g02004 184 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Lapu6g02004 184 ProSiteProfiles AP2/ERF domain profile. 39 97 IPR001471 GO:0003700|GO:0006355
Lapu6g02004 184 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Lapu6g02004 184 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Lapu6g02004 184 Coils Coil 134 166 - -
Lapu6g02004 184 SMART rav1_2 39 103 IPR001471 GO:0003700|GO:0006355
Lapu6g02004 184 FunFam Ethylene-responsive transcription factor 2 38 99 - -
Lapu6g02004 184 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Lapu6g02004 184 PANTHER DNA-BINDING DOMAIN 27 176 IPR044808 GO:0003700|GO:0009873
Lapu6g02004 184 MobiDBLite consensus disorder prediction 136 159 - -
Lapu6g02004 184 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02004 Lapu-Chr6 19834270 19834890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02004 1 180 AP2-EREBP Transcription Factor Family AT3G23240 49.444 1.81e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g02004 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02004 K14516 - gmx:100787732 202.601