Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02003 ATGCCAAACCACTGCTGGAACCTTCACACCTCATCATCTTCCTTCCAAGAAAAACCACAACTAACACCTCTGAACCCCCCTAAAGATGAGCCAAGACAACAACCTATGAACATCTCCACCATCTCTAGGCCCAGGGGTCGCCCTCCAGGCTCCAAGAACAAGCCCAAACCTCCATCACGCATGACCCGAGACACCCATAATGTTATCGAAAGTCACGTGGTCGAGATAACAACTGGAGCCGACATCACCAACAACTTGGTCCACTTTGCTCGAAGGAAAGAACGAGGCTTTTGTGTTCTGAGCGCCATCGGGAGCATTAGGAATGTCACTCTCCAGCAGTCCTTGATCCCTGACACCATCATGACCCTCGAAGGTCAGTTGCAGATACTGTCGTTGAGAGGTTCCTTTCTGCCCGGAGCAACACCGCCTACGTTGTCTGTTTATCTCGCCGGTGCTAAGGGACAAGTTGTCGGCGGCAAAGTGGTGGGTCCGTTCGTGGCTTCAGGAACAGTTATCATCATTTTGGCTGCGTTTTCTAATGCTGCGTATGACAGATTGCCCTTTCAGTTTCAGGGTCACGAAGAGGCTTCCTCCTCCAATCATCATCTTCATCATCGCCATCGTAACAAACTAAACTTTAGATGA 645 0.5008 MPNHCWNLHTSSSSFQEKPQLTPLNPPKDEPRQQPMNISTISRPRGRPPGSKNKPKPPSRMTRDTHNVIESHVVEITTGADITNNLVHFARRKERGFCVLSAIGSIRNVTLQQSLIPDTIMTLEGQLQILSLRGSFLPGATPPTLSVYLAGAKGQVVGGKVVGPFVASGTVIIILAAFSNAAYDRLPFQFQGHEEASSSNHHLHHRHRNKLNFR* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02003 214 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g02003 214 PIRSF ESCAROLA 3 212 IPR014476 GO:0003680
Lapu6g02003 214 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 180 IPR005175 -
Lapu6g02003 214 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 203 IPR014476 GO:0003680
Lapu6g02003 214 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 189 - -
Lapu6g02003 214 CDD DUF296 72 152 IPR005175 -
Lapu6g02003 214 MobiDBLite consensus disorder prediction 1 66 - -
Lapu6g02003 214 ProSiteProfiles PPC domain profile profile. 66 199 IPR005175 -
Lapu6g02003 214 MobiDBLite consensus disorder prediction 32 46 - -
Lapu6g02003 214 Gene3D - 70 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02003 Lapu-Chr6 19821619 19822608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02003 43 204 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 53.939 4.92e-50 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02003 - - var:108344319 248.054