Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02001 ATGGAAAGAGGGCTGTTTCTTTTGTTTTTCTTGCTGTTGGTTATGGTGCTTTCTGTCTTTGCCATGGATGTGGAATATTCACACTGCAATTGTGATGAGGAAGGGCTTTGGAGCATCCACAACGTCCTGGTTTGCCAGAAAGTGAGTGACTTTTTCATTGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGCCGCTCCAATGTCCCCTTTAAATTGGTCTTCCTTCAATTCATTGCCTTCATAGTTCTCTGTGGATCCACCCATTTACTCAACGCCTATACTTACTATGGCCCCCACTCCTTCCAGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACCGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACCCTCATACCTCTTCTGCTGAAAATCAAAGTGAGGGAGCTCTTCTTGAGACAGAATGTGTTGGAATTGGGCCAAGAGGTTGGGATTATGAAGAAACAGGAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATCTTGTATACCACGCTTGTTGAGCTTTCCAAGGCCTTAGACTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGAGAGAAATGCTTTTGACACATGAGTTGAAACCAAACACAGCAAGTAGTTTTCACAATTCTATTCCTACTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCAAAGGGGTGTGGATTTTAAGGCCTGATTCTGCACTAGGAGCTGCAAGTAGCGGTGGTGGATCTGGTGAGTCAGGTGCCGTGGCAGCCATCCGCATGCCAATACTTCATGTTTCCAATTTCAAAGGAGGGACACCAGAGTTGGTTGAGACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACAACCGGGCTTGGACCTCCCATGAGATGGAGATAGTGGAAGTGGTTGCTGACCAGGTGGCTGTGGCCTTGTCTCATGCGTCTGTTCTTGAAGAGTCTAAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGATATTGCAACAGGCTCAGAACAATGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGAAGGCCAATGCATTCAATCCTCGGGTTGCTTTCAATGTTTCAAGAGGATAATATAAGGCCAGAACAGAAGATAATTATTGACTCAATTTTCAAAGTTAGCAATGCACTCTCACGATTGATTAATGATGTGATGGAGATTTCCACGAATGACAATGGAAACTTCCGGTTAGAGATGAAACCTTTCAATCTGCATTCAATGATGAGGGAAGTTTTTTGCACTACCAAGTGTTTGTGTATATATAAAGGCTTTGGCCTTGAAGTTGATGTTGACAAGTCTTTACCTGATCTGGTCGCTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATGTGACAAAGGAACACTCATATTTCAAGTTTATCTTGAAAGTGGCAATGAAGACAAAGATGACAGAAGTTTTGGAATATGGAGATCAAGCATGCAAAATGATTATGTACATATAAAATTTCATTTTCAAATAAATGGCATTAGTTCCCAGTCAGACGAATCATTTTCAACAACAAATTATACTGGTAGAAGGCACCACAACAATGAACCCAAGGAAGGTCTGAGCTTCAGCATGTGCAAGACGCTAGTGCAGATGATGCAAGGTAATATTTGGATGTCAACTAACTCTCTGGGTGTGACACAAGGAATGACACTTCTTCTCAGGTTTCCAACAGGATCATCTCATGGAAGATTCATTCTTGCTCCTAAAGATTTTTCAAACTCCCAGTTTAGAGGCCTTAAGGTTGTGTTAGCTGATGATGATGATATAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGAATTGAATGTCTTGGTGCTATAAGCGCCTCTGGTAACACGTTCAAAATTATTCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTACAAGAAGGATTCGAAAATTCCAAAGCCATAGTTGGCCCTTGATCATAGCTTTGACTGCAAGTGCAGAAGAACACGTCAAGGAGAGATGTCTACAGATGGGAATGAATGGATTGATTCAAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTCGAACAGTCCTGCAACGTGCAGGTGAAAAATTAATCGCTTCCCATCAAACAGAAAAGGACGAAATGCAAAATTCTGAAAGTGCGTAG 2331 0.423 MERGLFLLFFLLLVMVLSVFAMDVEYSHCNCDEEGLWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGSTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQEEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDDRREMLLTHELKPNTASSFHNSIPTSDPDVLDIKKSKGVWILRPDSALGAASSGGGSGESGAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNNRAWTSHEMEIVEVVADQVAVALSHASVLEESKLMSQKLAEQNRILQQAQNNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIIIDSIFKVSNALSRLINDVMEISTNDNGNFRLEMKPFNLHSMMREVFCTTKCLCIYKGFGLEVDVDKSLPDLVAGDEARSFQVILHMIGYLLNICDKGTLIFQVYLESGNEDKDDRSFGIWRSSMQNDYVHIKFHFQINGISSQSDESFSTTNYTGRRHHNNEPKEGLSFSMCKTLVQMMQGNIWMSTNSLGVTQGMTLLLRFPTGSSHGRFILAPKDFSNSQFRGLKVVLADDDDINRTVTKKLLEKLGCQVTAVSSGIECLGAISASGNTFKIILLDLHMPEMDGFEVTRRIRKFQSHSWPLIIALTASAEEHVKERCLQMGMNGLIQKPILLHEIADELRTVLQRAGEKLIASHQTEKDEMQNSESA* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02001 776 SMART gaf_1 183 343 IPR003018 GO:0005515
Lapu6g02001 776 Coils Coil 342 369 - -
Lapu6g02001 776 Pfam GAF domain 185 333 IPR003018 GO:0005515
Lapu6g02001 776 SUPERFAMILY CheY-like 629 754 IPR011006 -
Lapu6g02001 776 ProSiteProfiles Histidine kinase domain profile. 376 613 IPR005467 -
Lapu6g02001 776 Pfam His Kinase A (phospho-acceptor) domain 370 434 IPR003661 GO:0000155|GO:0007165
Lapu6g02001 776 CDD REC_ETR-like 633 748 - -
Lapu6g02001 776 Gene3D - 167 333 IPR029016 -
Lapu6g02001 776 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 610 IPR036890 -
Lapu6g02001 776 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lapu6g02001 776 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Lapu6g02001 776 FunFam Ethylene receptor 631 755 - -
Lapu6g02001 776 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 756 - -
Lapu6g02001 776 SMART REC_2 633 748 IPR001789 GO:0000160
Lapu6g02001 776 Gene3D - 633 776 - -
Lapu6g02001 776 CDD HATPase_ETR2_ERS2-EIN4-like 475 607 - -
Lapu6g02001 776 SUPERFAMILY GAF domain-like 186 336 - -
Lapu6g02001 776 CDD HisKA 368 429 IPR003661 GO:0000155|GO:0007165
Lapu6g02001 776 Gene3D - 334 432 - -
Lapu6g02001 776 Gene3D - 433 614 IPR036890 -
Lapu6g02001 776 FunFam Ethylene receptor 4 336 430 - -
Lapu6g02001 776 Pfam Response regulator receiver domain 635 747 IPR001789 GO:0000160
Lapu6g02001 776 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Lapu6g02001 776 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 355 435 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02001 Lapu-Chr6 19804906 19810389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02001 23 757 Miscellaneous Gene Families AT3G04580 62.249 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu6g02001 GAF 1.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02001 K14509 - gmx:100805023 1329.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02001 6 19804906 19810389 Lapu7g00084 7 882361 886797 ECH
Lapu6g02001 6 19804906 19810389 Lapu6g02001 6 19804906 19810389 ECH