Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02000 ATGCTGTACCCTCACTCCGTCGCCTCCGCGGTCTCGTCGCAGCTCGAACCTGCCAAGAGGAAGCGGGGGCGGCCCAGGAAGTACGGCACCCCGGAGCAGGCTCTCGCTGCCAAGAAAGCCGCTACGACGTCGTCTCAGTCGTTCTCCGCGGACAAGAAGTCCCACTCCGCAACGTTCCCTTCTTCCTCATCTTTCACGTCCAAGAAATCTCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTGTCTGCATCTGGCTCCATCTCCAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTGGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCTCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGTCCAAAAGTTGATGCCTCTGCAAGCAAGTTGGCCCCACCAGTTGAACCAGTATCAAGTTTAGGTTTCCGCCAATCAGTCGACTCTCCTACTGGAAATCCAATCCGTGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCACCCCGGTCCACAGACTGGGGTCGACCGGATTCAAGAAATACCAGTTTTGAGCTGACAGGAAGGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 909 0.5094 MLYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTSSQSFSADKKSHSATFPSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASASKLAPPVEPVSSLGFRQSVDSPTGNPIRGNDEHQAMGGSHFMIQQLGLQGTPPRSTDWGRPDSRNTSFELTGRTGHGAHQSPENGGYEQIPD* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02000 302 Gene3D - 84 209 - -
Lapu6g02000 302 MobiDBLite consensus disorder prediction 201 244 - -
Lapu6g02000 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 12 230 IPR039605 GO:0003680
Lapu6g02000 302 MobiDBLite consensus disorder prediction 224 238 - -
Lapu6g02000 302 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Lapu6g02000 302 MobiDBLite consensus disorder prediction 258 288 - -
Lapu6g02000 302 MobiDBLite consensus disorder prediction 1 66 - -
Lapu6g02000 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 194 - -
Lapu6g02000 302 CDD DUF296 83 194 IPR005175 -
Lapu6g02000 302 MobiDBLite consensus disorder prediction 37 66 - -
Lapu6g02000 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 194 IPR005175 -
Lapu6g02000 302 MobiDBLite consensus disorder prediction 258 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02000 Lapu-Chr6 19794503 19801020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02000 2 302 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 51.524 1.31e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02000 - - gmx:100816781 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02000 6 19794503 19801020 Lapu6g02000 6 19794503 19801020 ECH