Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01997 ATGTTCAAGCTCTCTCGCGTGCTTCATCTCACTTCTTCTCCTAGGCATAGGCTGTTGGAAGTGTTGTCGTCTAGGAAAGTTGGAGTTGGAGACTCTCTGGGGGATCGGCGTGATTTTACCCATTCAGCTGGCATTTCTACTGCTACAAATAATTATGCTGCCAAAGGATATGCCTCGGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGGCGTGGTTCAATGATGATGACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAACCATGGGCTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAACGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTAATGCAAACAGCAATGGATACTTTGTGTCATTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACATATTATGGGTTGGGACCAGATAACGAATCAGCGATCCGTAGGTACAGTTGGCCTTCAACGGAAGGGTGACTCTCAAGTTTTAGACTTGGAATGGGAAAAATGA 732 0.4358 MFKLSRVLHLTSSPRHRLLEVLSSRKVGVGDSLGDRRDFTHSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQRSVGTVGLQRKGDSQVLDLEWEK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01997 243 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 221 IPR009044 GO:0003677|GO:0006355
Lapu6g01997 243 Pfam Whirly transcription factor 68 202 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lapu6g01997 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lapu6g01997 243 Gene3D Transcriptional Coactivator Pc4; Chain A 52 223 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01997 Lapu-Chr6 19769959 19773949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01997 37 243 Whirly Transcription Factor Family AT1G71260 61.682 7.48e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lapu6g01997 Whirly 6.2e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01997 K26561 - gmx:100817863 408.683