Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01990 ATGGAGTCAAAGAAGCAGTGGAAGGAAGGAGGGAGTTCAAGGTCGAAAATTTCTGCACTGATTGTGGATGACGACGCTCTCATTCGGAAAATCCACAAGACGATGTTGGAGCGGTTATTTAACATGGACGCAGAAACGGTTAATGACGGAAAGGAAGCAGTGGATCTGCATCGATGTGGGGCAAGTTTTGACATAATTTTCATGGACAAAGAAATGCCAATCATGGATGGTCATGAGGCGACAAAAGAGCTTCGTGGTATGGGTGTTAAGAGTTTGATTGTGGGAATTACCACGCGTGCTGATGAGAAAGATACAGAAGAATTTGTAGCTGCAGGATCCAACTATTGCTTTGAGAAGCCTCTTGATCGTGCAAAGGTTGAACGAGTCTTGCAAGACCATCCAAATTTTACAATTTGA 417 0.4365 MESKKQWKEGGSSRSKISALIVDDDALIRKIHKTMLERLFNMDAETVNDGKEAVDLHRCGASFDIIFMDKEMPIMDGHEATKELRGMGVKSLIVGITTRADEKDTEEFVAAGSNYCFEKPLDRAKVERVLQDHPNFTI* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01990 138 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 132 - -
Lapu6g01990 138 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Lapu6g01990 138 SMART REC_2 17 130 IPR001789 GO:0000160
Lapu6g01990 138 Gene3D - 1 134 - -
Lapu6g01990 138 SUPERFAMILY CheY-like 15 133 IPR011006 -
Lapu6g01990 138 CDD REC_hyHK_CKI1_RcsC-like 20 130 - -
Lapu6g01990 138 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01990 Lapu-Chr6 19677830 19678465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01990 10 126 Response Regulator Gene Family AT3G04280 47.244 4.02e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu6g01990 Response_reg 9.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01990 - - pvu:PHAVU_006G107500g 241.121