Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01983 ATGTGGGGTGAGGATGGGTTCCCGAACACATTGTGCTGTCGAAATGCTCTCATGATTTTGGCCAATGCGTTCGCCACACAAGCACTGAGATCGGGAGGGCAAGTGTTCCTTTCCCAAGATCAATTGAAGAGTTGTTCGCAGTCATTTCACCCGCAACAAGGGATGTCACTTGATTCATGTGGCTTAGACAACTTGTACCGAGGCAGTTCCATATGCTCCAACTTCATTTTGCAGGATGTTAGGAGCCTGCAACAGTACCAAGATGCATTGAGCCAGTGCTCCCACTTCAACCAACGTTTTGATAAATCTTGTGCAGATTGTACCAGTGGAATATTGAGCGTGAGAGATACTTTATATTCTCAGGTGGCCAAAAACGACAACGACACTGACAGAGCCATATGTGGGGTAGCAGCTATTGTTGCTCTTGCAGCTGGTAGTCCGAACGATCCTCTCGTAGACAAATTTTTACGATGCTTGCCATCTTCAGCTTCAGGATCAGACAAGAGATCTATGTGGAAAGCCTTTCTGAGTGTGCCAGTAGTTGTGGTTGTAATATTGCTTGTTGTTATTATGGTGAAATGTTTGTCCAAGAAGAAGGGTCGTAGACAGGTTGACTTGAAAGAGATCACTGCATGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGTGGTCGAAAGATAAGCCTTGGACGTGGAAGTGCAGGGCAGGTATATAGAGGTGTTCTACCCAGTGGTCAAATCGTGGCCATCAAGCATTTAACAAGGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGCCTTTCAAGGCTTCGCCATCCAAACCTGGTTTGCCTCTTTGGGTGTTGCATTGAAGGGGATGAAAGATATTTAGTCTATGAGTTTTGCGCAAACGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGTCACTTGACTTGGGAAACAAGAGTAAGAATTTTGAGAGATTGTTCATTTGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGACTGAGAAATACCAAGCCAAACTGTCGGATTTTGGACTGTCAAAGGTGATGGGAATTAAAGAGAGCAAGGTTTTTACTGATGTAAGAGGAACCATAGGCTACATGGATCCAGAATACATGAGTAATGCCAAACTAACATGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTCTACAAATATTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGATCAGCTCACTAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGTCCATTGTCTGATTTTGAAGACCCACGGCTAAAAGGAAAGGTTGACAAGGCAGACTTTGAAGCCATCCTACAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGGTTGTTTTTGAAGAATTGGAAAGGGTCTGCATGGACACAGAAACCAAGATGAAGGCAAAGAAGGATGACAACTCATCAACAACATCCACCCCCAGCTCCAAATCCTCCAAATCAGCTCCTCTTTGA 1596 0.4386 MWGEDGFPNTLCCRNALMILANAFATQALRSGGQVFLSQDQLKSCSQSFHPQQGMSLDSCGLDNLYRGSSICSNFILQDVRSLQQYQDALSQCSHFNQRFDKSCADCTSGILSVRDTLYSQVAKNDNDTDRAICGVAAIVALAAGSPNDPLVDKFLRCLPSSASGSDKRSMWKAFLSVPVVVVVILLVVIMVKCLSKKKGRRQVDLKEITAWSGLYWFCKREIENAMNYGGRKISLGRGSAGQVYRGVLPSGQIVAIKHLTRSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLSKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLKGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFEELERVCMDTETKMKAKKDDNSSTTSTPSSKSSKSAPL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01983 531 ProSiteProfiles Protein kinase domain profile. 230 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01983 531 Coils Coil 493 513 - -
Lapu6g01983 531 Pfam SPARK 7 127 IPR043891 -
Lapu6g01983 531 SUPERFAMILY Protein kinase-like (PK-like) 216 497 IPR011009 -
Lapu6g01983 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Lapu6g01983 531 MobiDBLite consensus disorder prediction 505 531 - -
Lapu6g01983 531 Pfam Protein kinase domain 235 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01983 531 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 525 - -
Lapu6g01983 531 SMART serkin_6 230 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01983 531 MobiDBLite consensus disorder prediction 514 531 - -
Lapu6g01983 531 Gene3D Phosphorylase Kinase; domain 1 190 303 - -
Lapu6g01983 531 Gene3D Transferase(Phosphotransferase) domain 1 304 525 - -
Lapu6g01983 531 FunFam probable receptor-like protein kinase At5g59700 304 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01983 Lapu-Chr6 19607307 19609851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01983 236 519 Receptor kinase-like Gene Family AT1G51800 41.724 1.38e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Lapu6g01983 Pkinase 8.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01983 - - vum:124837890 911.368