Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01981 ATGAATTGTTTCCCGTGTTTTTCTAAGAGTAAGAGAAGCAATAGCAAAAGGGAGCAGCAAGGGCATACATCACAGGAAAACGTTGTAGCCACAAGAACACCTCAAGAGGTAAAGAAACAAAAGGCAGAGGATCCAAACCATGTTGACACTTCAAATATTCAAGCACAAAACTTCACGTTCCGTGAACTAGCAATTGCAACAAAGAATTTCCGGCAAGAATGCTTGATGGGTGAAGGGGGCTTTGGCAGAGTTTACAAGGGAACAATTCCAGCAACTGGGCAGGTGGTGGCGGTGAAGCAGCTCGACCGAAATGGGTCACAAGGAAGTAAGGATTTTTTGGTTGAGGTTTTGATGTTAAGCCTCTTGAACCATGAAAACCTCGTCAAACTCACTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTGTATGAGTTCATGCCAGGTGGCTCTTTAGAAGGCTGTCTTCTTGAGAGGAAACCAGATGAACCTCCTTTAAATTGGTACAACAGAATGAAAATAGCATCACATGCGGCGAAAGGACTATGGTACTTGCACGACAAGGCCAACCCTTCAGTTATATATCGGGACTTGAAATCTTCGAATATCTTGCTGGATGATGACTGCAATGCAAAACTATCAGATTATGGATTGGCCAAACTTGCTGGGAAAGATAAGATGAACATTGTACCCACAAGAGTTATGGGCACTTATGGTTACAGTGCTCCCGAGTACGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTCTACAGTTTTGGAGTTGTCTTGCTGGAGCTCATTACTGGACGGCGTGCGGTTGACACCACAAGAACGCACGACGAGCAAAATCTAGTTTCATGGGCACAACCCATATTCAGGGATCCAAAGAGATATCCAGATATGGCAGATCCAAATCTGAAAAAAGATTTCCCAGAAAAGGATTTGAACCAAGTTGTTGCAATTGCCGCCATGTGCTTGCAGGAGGAAGCAGCAGCCCGTCCCTTGATGAGTGATGTTGTAACTGCTCTCAGTTTTCTTTCCACCACTGCTCCAGAGGGAGGTGCCGCTGAAAACGACCGTCGTAGCTCCTCCGATGAAATTTCTTCCGACGAGGACAATGGAACTCCTAAAAACCAGGTTAGTGCAAAATACCAAGAAAGTGAAGACGCCTCAGAAACTGAGTATGATTATTATGAGAATGAAAACCAACATAATTACAGTCCCCAAGACACTAAAGAGACCAAGGAGTTCTACTCCAAATCCAGCCGCAAGAGCAGCACCAAATCAAAGAATGGAATCACTTCCTCTAGCCAAAGGAGAAGCTTCAATTCAGATTCAGAAAATGGATGTGTCTCAACCGGCCGCAAAAGTAGTAGGAAAAGTAGGAAAAAGAAATCTTCGTTAAACCAGAGGAGCAGTAAAAAATCTTCTTTGAACCAAAAGAGCAACAAGAAATCTTCTGTCAAAGTCTTAAGCAACAAGAAAAGTCGTTCATCCGATTTAAGTAGCAGTGCGACGTCACAACATGATGGTGGCGATGTTATTGAGCAAAGCGGAAGCGGGCCATCAGAAGGGAACATTTCAATTGGCCTATTTAGCAGTGAGAGTGTTCACTCAGACAATGACAGCAGCATAAGGTCCAAGGAAAGGAGCAACATGCATTTAGATTATACCGACAACAGGGAATCG 1692 0.4385 MNCFPCFSKSKRSNSKREQQGHTSQENVVATRTPQEVKKQKAEDPNHVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGSQGSKDFLVEVLMLSLLNHENLVKLTGYCADGDQRLLVYEFMPGGSLEGCLLERKPDEPPLNWYNRMKIASHAAKGLWYLHDKANPSVIYRDLKSSNILLDDDCNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRTHDEQNLVSWAQPIFRDPKRYPDMADPNLKKDFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTTAPEGGAAENDRRSSSDEISSDEDNGTPKNQVSAKYQESEDASETEYDYYENENQHNYSPQDTKETKEFYSKSSRKSSTKSKNGITSSSQRRSFNSDSENGCVSTGRKSSRKSRKKKSSLNQRSSKKSSLNQKSNKKSSVKVLSNKKSRSSDLSSSATSQHDGGDVIEQSGSGPSEGNISIGLFSSESVHSDNDSSIRSKERSNMHLDYTDNRES 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01981 564 CDD STKc_IRAK 76 344 - -
Lapu6g01981 564 SUPERFAMILY Protein kinase-like (PK-like) 47 347 IPR011009 -
Lapu6g01981 564 SMART serkin_6 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01981 564 MobiDBLite consensus disorder prediction 472 541 - -
Lapu6g01981 564 MobiDBLite consensus disorder prediction 407 424 - -
Lapu6g01981 564 MobiDBLite consensus disorder prediction 1 51 - -
Lapu6g01981 564 MobiDBLite consensus disorder prediction 425 456 - -
Lapu6g01981 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lapu6g01981 564 MobiDBLite consensus disorder prediction 542 564 - -
Lapu6g01981 564 Gene3D Phosphorylase Kinase; domain 1 28 146 - -
Lapu6g01981 564 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Lapu6g01981 564 MobiDBLite consensus disorder prediction 351 564 - -
Lapu6g01981 564 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01981 564 MobiDBLite consensus disorder prediction 457 471 - -
Lapu6g01981 564 PANTHER OS07G0668900 PROTEIN 3 353 - -
Lapu6g01981 564 Gene3D Transferase(Phosphotransferase) domain 1 147 370 - -
Lapu6g01981 564 MobiDBLite consensus disorder prediction 359 373 - -
Lapu6g01981 564 ProSiteProfiles Protein kinase domain profile. 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01981 564 MobiDBLite consensus disorder prediction 20 34 - -
Lapu6g01981 564 FunFam Serine/threonine-protein kinase PBS1 147 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01981 Lapu-Chr6 19594066 19596665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01981 1 372 Glycoside Hydrolase AT3G07070 61.979 1.63e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lapu6g01981 Pkinase 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01981 - - gmx:100807682 806.979