Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01948 ATGGAAGAGAGCACCAAAAGAAAACACACTAGCCTCATCCATGAACTTATCCAAGGAAAGGAGCTAGCAAAGCAGCTCGGTAACCATCTGGTTTCTTCTTCTCCATCATCACATGAAACCAATGAATTGTTGGTTGAGAAAATTCTCTTGTCTTATGAGAGAGTACTCGCCATGCTGAACCGGGGGTCTATTTTGGGAGAGGCCAAAACCACCAGTGGCACCATGATGGATTCCCATTGTTCTTTTGCAAGTGGCGGGAGTCCCAGAAGCGAGGTCGTGGACCTTGAATTTGAGCACAAAGCTGTCCTCAAGAAAAGAAAGACCATGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGAACAGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATACGGGCAGAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTTCAAGGGTGCCTGGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTACAGAGGAAGACATACGTGCACGCAAGCTAAATATTTGAACAAGGCATTCCCATCAAACATAAAGATGGGTTCGGGGGAAAATCAATTCCCCAATGATCAAAATAACCAACAACTACTTCAAGAGAAAGTACAACAAACCCCAGTGGAGATTTTTGCCTTTGAAACAGAGAATAGAGTCAAAACTGAGGAATTGGAAATCAAGGAGGATATCTTTCCATGGTTTTCATTTCCTTGTCCATCAATTGGATCAGAAAACGAGGACAACATGTTACCCGAGTCCATGATTGAAAACCATTTCATGGAAAGCTTTTCTCCTGCATTCATATCAGCAGCGACTTCAGAATCAAACCCTTTCTGCTTGTCAGCATACGACGTTGACAGCACTGAACTGTTATGCCAATACATACAAACTTCAGAGTCTGATAACACTGAGACAGTTTCCGCTCCAACTTCAGTAACCAACTCCCCGCATTTGGACATTTTCCTTCATAAAGGGGATTTTGACACGGATTTCCCTTTGAATACCTCCGATTTTTTCTCTTCATTCGAACTTCCCTGCACTTCCACGTAG 1116 0.4319 MEESTKRKHTSLIHELIQGKELAKQLGNHLVSSSPSSHETNELLVEKILLSYERVLAMLNRGSILGEAKTTSGTMMDSHCSFASGGSPRSEVVDLEFEHKAVLKKRKTMPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKYLNKAFPSNIKMGSGENQFPNDQNNQQLLQEKVQQTPVEIFAFETENRVKTEELEIKEDIFPWFSFPCPSIGSENEDNMLPESMIENHFMESFSPAFISAATSESNPFCLSAYDVDSTELLCQYIQTSESDNTETVSAPTSVTNSPHLDIFLHKGDFDTDFPLNTSDFFSSFELPCTST* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01948 371 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 323 IPR044810 GO:0003700
Lapu6g01948 371 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01948 371 FunFam WRKY transcription factor 53 114 191 - -
Lapu6g01948 371 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01948 371 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01948 371 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g01948 371 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01948 Lapu-Chr6 19342299 19345116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01948 16 199 WRKY Transcription Factor Family AT5G24110 46.196 1.51e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g01948 WRKY 5.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01948 - - gmx:100790050 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01948 6 19342299 19345116 Lapu10g00227 10 4245165 4247833 PCT