Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01943 ATGAAGAACTTGAGAAGAGCTTCAATTGTTCATCCCTTAAGTGATGGACAGAAAAAGCTGCAACATAGGAAGACAATTCTTGATCCACAGGGTCCAATACTTGAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGTTGGCAGTCTCTGTGGACCCGTTCTTCTTTTACATTCCAGTGATTAATGATGAAAAAAAATGCCTTGATTTGAGTGGAACATTGCAGATCACTGCCAGTGTTTTTCGCACCTTTTTTGATCTATTCTACATTCTTCGCATAATCTTCCAGTTCAAGACAGGGTTCATTTCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCAATGATGATCCTGTGGCTATAACGAAAAGATACTTAACTTCATACTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTGATTGTTTTAGCCATACATCCAAACATGAAAACAGATCCATTTGTGGCAAAGGATTTGTTGAAGTATTCTGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATCCATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCAGGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTAGTTGGAGCTTTCTGGTATTTGCTCTCGGTAGAGTCAGAGCTGCGTTGCTGGCGCAAAGAGTTGAAGAGTGTAGACTTGAGCTGTAGAAACCGCAAGCAAGATGTCATTACACTTCTCAATCAAACTTGTTCTTTGGTTGACCCTGATGATATCATAGACCCAAAGAACTACAATTTTGGAATATTTTTTGATGCTTTACATTCAGGTGTCGTAAAATCAACAACAGATTTTCCTGTTAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTTTAAGTTCTCTTGGACAAGATCTCAAGACAAGTGCTTATGTGCCAGAGATAGTCTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTATTCTCGTTACTTATTGGAAACATGCAGAGATATTTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGGGAAGAATTAGACAGTATGAACAGTATCAGTGGCAAGAAAATAGGGGTGTCGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGCCTAACTTTAGTTAAAAAGGTGCCAATATTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATATGCAGTAGACTGAAGCCAGTTCTTTATACTGAGAAGAGCCGCATTTTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTCTCTACCGTGACGACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTTCTCGAAGCAGGTGCATTCTGCGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCGAATCTACCCATTTCAACTAGGACTGTAGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCGGATGACTTGAAGCTTGTTGCTTCCCAATTTCGCCGTCTTAGCAGCAAAGAGCTCCAACACGCTTTCAGATTCTATTCCTCACAGTGGAAGACATGGGCTGCCCGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCTTTGCACGTAGAAGAAGACAAGCTACAAGATGCCCTGACAAAGGATGATGGCTCTACTCTAAGCCTTGGTGCAGCCATATATGCATCAAGGTTTGCTGCTAATGCAGTGCGGAACTTGAGAGAAAATAACAGACAGAATAGAGTGCAACAGAGACTACTGCCTCTGCTACCTCCAAAGCCAGCCGAGCCAGATTTCACTTCTCTGAAACACTAA 1962 0.419 MKNLRRASIVHPLSDGQKKLQHRKTILDPQGPILEKWNKIFVITCVLAVSVDPFFFYIPVINDEKKCLDLSGTLQITASVFRTFFDLFYILRIIFQFKTGFISPSSRVFGRGELNDDPVAITKRYLTSYFIIDILSIIPLPQVIVLAIHPNMKTDPFVAKDLLKYSVLIQYVPRLLRIHPLFKEVTRTSGILTETAGAGAAYNLFLYMLASHVVGAFWYLLSVESELRCWRKELKSVDLSCRNRKQDVITLLNQTCSLVDPDDIIDPKNYNFGIFFDALHSGVVKSTTDFPVKFFYCFWWGLRSLSSLGQDLKTSAYVPEIVFAIFIAIFGLVLFSLLIGNMQRYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKGRIRQYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLTLVKKVPIFEKMDEQLLDAICSRLKPVLYTEKSRIFREGDPVDEMLFIMRGKVSTVTTNGGRTGFFNSLFLEAGAFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKLVASQFRRLSSKELQHAFRFYSSQWKTWAARFIQAAWRRYWKKKIERSLHVEEDKLQDALTKDDGSTLSLGAAIYASRFAANAVRNLRENNRQNRVQQRLLPLLPPKPAEPDFTSLKH* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01943 653 FunFam Cyclic nucleotide-gated ion channel 1 352 416 - -
Lapu6g01943 653 Pfam Cyclic nucleotide-binding domain 446 535 IPR000595 -
Lapu6g01943 653 Gene3D Helix hairpin bin 352 416 - -
Lapu6g01943 653 Gene3D - 38 349 - -
Lapu6g01943 653 Coils Coil 577 597 - -
Lapu6g01943 653 FunFam Cyclic nucleotide-gated ion channel 1 423 541 - -
Lapu6g01943 653 ProSiteProfiles cAMP/cGMP binding motif profile. 425 509 IPR000595 -
Lapu6g01943 653 Pfam Ion transport protein 37 353 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu6g01943 653 SMART cnmp_10 425 556 IPR000595 -
Lapu6g01943 653 SUPERFAMILY Voltage-gated potassium channels 28 347 - -
Lapu6g01943 653 SUPERFAMILY cAMP-binding domain-like 354 547 IPR018490 -
Lapu6g01943 653 Gene3D Jelly Rolls 423 543 IPR014710 -
Lapu6g01943 653 CDD CAP_ED 425 556 IPR000595 -
Lapu6g01943 653 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01943 Lapu-Chr6 19288937 19292565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01943 18 650 Ion Channels AT5G53130 65.839 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01943 K05391 - gmx:100797784 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01943 6 19288937 19292565 Lapu10g00238 10 4401230 4406965 PCT