Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01941 ATGGAGCAGAACAGGGGCAGCAAGATGTGCAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCTTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAAGGATCGTCTCTTCGAACTCACCGGAATTCCTGTGCAGCACCAGCGCCTCGTTACCGGATTTCGCCACCTTAACGACGACAAATCGGCGATCCAATGCTCCCCGGAGGACGGCAACATGTTCCCGTCGGTTCGGCTTCTGCTGCGTCTGAAAGGCGGAAAGGGAGGCTTCGGGTCGCTTCTTCGCGGCGCCGCGACGAAAGCTGGGCAGAAGAAGACAAACAATTTCGACGCCTGTCGGGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAAGAGTGGAAGGCGGGAGAAGAGGAGAGAAGGCTCGAGAAGGTGGCGGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGTAAGGGTAAGGGAAAGGCTGGAGGTGATGGTGAAGCTCACAAATACGTGGAGAAATATAGGGCGGAATCTGAGCGTTGCGTTGCGGAGGTCGCCTTGTCCGTTAAGGAGGCTCTGACTGCCAAACGCAAGAGCCCTTCACGACCCCACCATGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGTTGAGGGGAAACTGGAGAAATCGGATTTGTTGAATGGCCAGAATGAGTCTGAGTCAACTAAGGCTGAGGGCAGTTCGGGTTCGGTGACTGGTGGAGGAGGCTCATCTGGTTCCGGCTCGTGTGAAAGTGGGTCCGAGGAGGAGAAGGAAACTGTTGTACAAGCAAGTGTGGGGTCTGTTGGGTTGCTGAGTGATGAAAGTATTCAGGCCATGGACGAGCCTGTGATAAGCGATGAGGCTACTGCAATGCCAAATGAGTCAGTGGTTGTTGGACTTAATGCGGAAGAAGATGTACATCAGGATTGCCATGGAGGTTTGTCTGACAAGCTTGATGGTGCTGTGAATCAGGCCTCAAATATTACAGGCTCTGAAACTGTGGCCATTGCTGGCGACTCTAATAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAGACCTTACCAAGCACTAGTGTTCCCGCAATGGAGGAGCCCCTTAATTTTGATGCCTTGAATTCCTCTGCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAGCTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCCAGGCTTTTTCTTTTAAAATCGACTCCTCTGGATAAACTTCCAAAGAAGCTGCTTGCTAAGAAGTGA 1383 0.5112 MEQNRGSKMCNLFVKHLDGKTLTLLFPSPILYASSIKDRLFELTGIPVQHQRLVTGFRHLNDDKSAIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKGKGKGKAGGDGEAHKYVEKYRAESERCVAEVALSVKEALTAKRKSPSRPHHDAKKLKIWMGKRKLNESDSDYSDDSDVEGKLEKSDLLNGQNESESTKAEGSSGSVTGGGGSSGSGSCESGSEEEKETVVQASVGSVGLLSDESIQAMDEPVISDEATAMPNESVVVGLNAEEDVHQDCHGGLSDKLDGAVNQASNITGSETVAIAGDSNNDMEIDGSLEHKAAVNEETLPSTSVPAMEEPLNFDALNSSAELEVLGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01941 460 MobiDBLite consensus disorder prediction 198 217 - -
Lapu6g01941 460 SUPERFAMILY Ubiquitin-like 7 89 IPR029071 -
Lapu6g01941 460 PANTHER SPLICING FACTOR SF3A-RELATED 11 459 - -
Lapu6g01941 460 Pfam Replication stress response SDE2 C-terminal 386 459 IPR025086 -
Lapu6g01941 460 Gene3D - 8 94 - -
Lapu6g01941 460 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 157 IPR024974 -
Lapu6g01941 460 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Lapu6g01941 460 MobiDBLite consensus disorder prediction 247 277 - -
Lapu6g01941 460 MobiDBLite consensus disorder prediction 224 246 - -
Lapu6g01941 460 Coils Coil 406 426 - -
Lapu6g01941 460 CDD Ubl_ubiquitin_like 12 77 - -
Lapu6g01941 460 MobiDBLite consensus disorder prediction 224 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01941 Lapu-Chr6 19280011 19283838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01941 386 459 C2H2 Transcription Factor Family AT5G06160 44.595 3.62e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01941 K25059 - gmx:100799364 635.95