Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01937 ATGAACTTCTTCAAGGCCATGTTCCACTTCTTCATACTTTTTGCTGTCGCATATGCCTCATATGATTGCCAATATTATTCTTGGTGCAGCGACAACAACATCCTTATTCGTTTTCCCTTCCAAATAGAAGGTCAGCAACATCCTTATTGCGGCTATCCTGGTTTCAAACTAACTTGTTCCAACGACAGCAAAACAGTTATAACATTTCCTTACTCGGGAAAGTTCTTTGTCCGCAACATTAACTACCTCAGACAACAGATGCAAGTGTATGACCCTGATGATTGCCTTCCAAAACGTCTTCTAAGACTCAACCTTTCAGGTTCTCCCTTTATTGCCACTTCACTCCGCAACTACACCCTCTTAAGCTGCCCTACTCGGCACACAGAGTCACAATTCATTCCCATCCACTGTCTTAGCAATTCAACATCTTTTGTATCAGCTATTCCTTCAGTGAACTTCACCAATTCGTTGCCCGAGTCTTGCCATGTTATAAAGCAGCTCTCATTTCCAGTTGCAGGGCTGGAACGATATGAGGAAAATTTGAAAGATAATGACCTTAGTGGAGATCTTCGATTAACATGGAATTCACCAGACTGTAGATATTGCGAATCACAAGAAGCTATGTGCGGATTTGATAGCATAAACAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACGGCACGTCAAGAACATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATTGTTGGACCAGCTATCATGGGTGCCATTGCGATGGCATGCTACGCCTCCTTCAAGTACAGAAGAGGCAACACAGCTAGAATTGCTGCAGCACAGAGGTCTACACCAGCTGGAATGTCACCCCAACCTGCCATTGTTAGGATGGGCTTGGATGAGTCTACAATCGAGTCCTATCAGAAACTGGTATTAGGGGAGAGCCGAAGAATGCCAGGGCCTAATGAGGGATGTTGCACCATATGTCTGTCAGAGTATAAAACCAAAGACACAATAAGATGCATTCCTGAATGTGCACATTGCTTCCATGCCGACTGCATAGATGAATGGCTTCGAATGAACAGTACATGCCCTCTTTGCCGCAACTCTCCTTCCCCTCCTTCTGCTGTTCTAGCCATCTCCACTAACCATTGA 1137 0.4398 MNFFKAMFHFFILFAVAYASYDCQYYSWCSDNNILIRFPFQIEGQQHPYCGYPGFKLTCSNDSKTVITFPYSGKFFVRNINYLRQQMQVYDPDDCLPKRLLRLNLSGSPFIATSLRNYTLLSCPTRHTESQFIPIHCLSNSTSFVSAIPSVNFTNSLPESCHVIKQLSFPVAGLERYEENLKDNDLSGDLRLTWNSPDCRYCESQEAMCGFDSINSDQVRCFFDYQTARQEHGLRVFGIITLSIVGPAIMGAIAMACYASFKYRRGNTARIAAAQRSTPAGMSPQPAIVRMGLDESTIESYQKLVLGESRRMPGPNEGCCTICLSEYKTKDTIRCIPECAHCFHADCIDEWLRMNSTCPLCRNSPSPPSAVLAISTNH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01937 378 CDD RING-H2_EL5-like 319 362 - -
Lapu6g01937 378 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Lapu6g01937 378 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Lapu6g01937 378 Pfam Wall-associated receptor kinase C-terminal 156 223 IPR032872 -
Lapu6g01937 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 367 IPR013083 -
Lapu6g01937 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 366 IPR046948 -
Lapu6g01937 378 SUPERFAMILY RING/U-box 314 367 - -
Lapu6g01937 378 SMART ring_2 320 361 IPR001841 -
Lapu6g01937 378 Pfam Ring finger domain 320 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01937 Lapu-Chr6 19253757 19258519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01937 29 367 C3H Transcription Factor Family AT2G25410 42.566 3.57e-90 274