Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01931 ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAGGAGGATGAACATCCTCATCAGTTTTCTTCAATCTCCAAGCTGCATAACAATGGCCCCACCACTACCAGTGTCCACGACCTTCTTGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCAATCCATCAGTGCCACAACGGGCACACACTTTGTTCAACTTGCAAGACAAGGGTACACAACCGATGCCCAACTTGCAGGCAGGAGCTGGGCGATATAAGATGTTTGGCATTAGAGAAGATAGCAGAGTCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCTTATTACAGCAAACTCAAACATGAGGCCATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCTGTGGTTGGGGATATTCCGTGCCTTGTTGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTCAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGCCAATATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCCGTCTACATGGCGTTCCTCCGATTCATGGGCGACGAAAGAGAGGCCCGAAATTACAGCTACAGTTTGGAGGTGGGTGGAAATGGACGAAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTTAATGGATCAGAATCAATGGCGAGCAACCCGGAGATAG 963 0.4704 MESSSIESSTVSSMTMMEEDEHPHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLLMDQNQWRATRR* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01931 320 SUPERFAMILY TRAF domain-like 101 293 - -
Lapu6g01931 320 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Lapu6g01931 320 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 25 295 - -
Lapu6g01931 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Lapu6g01931 320 SUPERFAMILY RING/U-box 35 87 - -
Lapu6g01931 320 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Lapu6g01931 320 FunFam E3 ubiquitin-protein ligase SINAT5-like 157 289 - -
Lapu6g01931 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 100 IPR013083 -
Lapu6g01931 320 CDD RING-HC_SIAHs 46 84 - -
Lapu6g01931 320 MobiDBLite consensus disorder prediction 1 33 - -
Lapu6g01931 320 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lapu6g01931 320 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 289 IPR008974 GO:0005515
Lapu6g01931 320 MobiDBLite consensus disorder prediction 1 16 - -
Lapu6g01931 320 FunFam E3 ubiquitin-protein ligase SINAT3 98 156 - -
Lapu6g01931 320 CDD Sina 162 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01931 Lapu-Chr6 19204290 19207708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01931 1 296 C3H Transcription Factor Family AT2G41980 71.812 4.96e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01931 K04506 - gmx:100792687 644.425