Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01927 ATGAAGGTTGACGTGGGGTTAGGGCGCGTGGCCTGGGGCGAGGAGGAGAAGGCCATGGTTGGGGCTGTTCTGGGTGGTCCAGCTCTGGAGTTCTTAACGACAAACTCGGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGATGAGGGACTTCAAAACAAACTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAACTACGCTATTTTCTGGCAGCTCTCTCAGTCGAAATCCGGTGACTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGAGAGCCCAACGAGGAAGAGGAGGGGGCGGCGAGAGGAACGCTAAGGCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGAGGAAGGGGGTGTTGCAGAAGCTGCACACAACTTTTGGAGGTTCAGACGAGGACAATTATGCCTTTGGCCTCGACCATGTGACCGACACGGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCTCGCGGGCATGGTGGCCCAGGTAAGTGCTTCGTCTCCGGGAAGCATTTGTGGCTGAAATCTGTGTCGGATTACTGCGTCCGATCTTCTTTGGTTAAATCCGCGGGGATTCAGACTATTGTTATGGTCCCTACTGATTTGGGAGTGGTGGAGTTGGGTTCCGTGAGAGTGTTACCCGAGAGTTTTGAACTAGTGCAGGCAGTTAAATCTGTTTTCTCTACACAGTGTTCGCGGTACCCTGGGGTGAACGTGAGCGCGGGTGGGAATGCGGTTTTTACCGGTTTGGCAATTGGGGATGGTAGTAAAGTTGATGGAGGAGTTCCAATTCCCAAGCTTTTTGCAAACGCAATTGGCAATCGGACGCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAACAGGCTTTGGGCAGGCCATGCCCTCCCCAATGGGAGCAACCTCAACAACAATCCGAACGCAAGGAACGGTCTTCATGTTTCTGGTTGGGCAGTGAATTCGGGTGTGAGGCAGGCTGGTCCTGTTGAGATTTTTGCTCCCAGGGCATCCACGAGTAGTGTTGTTGCGGAGCTGAGTAATGGTGTTAAACAGGATTTCAGGCTGAGCAACAGCTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTCACCGGAGCTACTTCTAGGCCTTCTCATGGGAGACCGGTTGTTGGTGATTCAGAGCTTTCTGATGTTGAGGCCTCTTGCAAGGATGAACAACCCAGTGTTTTGGATGAAAGGAAGCCCAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAACCTCTCAATCATGTGGAGGCGGAGAGGCAGAGACGGGAGAAGCTCAACCAGCGGTTCTATGCATTGAGATCTGTGGTGCCTAATATCTCCAAGATGGATAAAGCTTCGTTGTTGGGGGATGCAATTGCCTATATCAACGAGCTTCAGGCGAAAGTCAAGATCATGGAGGCTGAAAGAGAGAGATTTGGAAGCACTTCGAAAGATGGATCAGTTTTGGAATCCAACACCAGATCCGAAAGTCAAAATCAAGAGAAAGAAGCTCCTGACGTGGATATTCAAGCAGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGCCCTTTTGATACTCACCCTATTTCCAAAGTAATTCAAACTCTCAAAGAGGCACAAATCAGTGTTGTAGAATCAAAACTTGCTGCTGCAAATGATACTGTTTTTCACACATTTGTAATTAAGTCCCAAGGATCTGAACAACTTACAAAGGACAAGTTGATTGCTGTATTTTCCCCACCAGAATCCAACCCACTGCAGCCAGTGTCATCAGTTGGATAA 1836 0.4956 MKVDVGLGRVAWGEEEKAMVGAVLGGPALEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEGAARGTLRLLRVDEEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFVSGKHLWLKSVSDYCVRSSLVKSAGIQTIVMVPTDLGVVELGSVRVLPESFELVQAVKSVFSTQCSRYPGVNVSAGGNAVFTGLAIGDGSKVDGGVPIPKLFANAIGNRTHFREKLAVRKMEDNRLWAGHALPNGSNLNNNPNARNGLHVSGWAVNSGVRQAGPVEIFAPRASTSSVVAELSNGVKQDFRLSNSYQPQRQVQMQIDFTGATSRPSHGRPVVGDSELSDVEASCKDEQPSVLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSVLESNTRSESQNQEKEAPDVDIQAAQDEVTVKVSCPFDTHPISKVIQTLKEAQISVVESKLAAANDTVFHTFVIKSQGSEQLTKDKLIAVFSPPESNPLQPVSSVG* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01927 611 Pfam Helix-loop-helix DNA-binding domain 438 484 IPR011598 GO:0046983
Lapu6g01927 611 MobiDBLite consensus disorder prediction 496 525 - -
Lapu6g01927 611 MobiDBLite consensus disorder prediction 404 445 - -
Lapu6g01927 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 437 497 IPR036638 GO:0046983
Lapu6g01927 611 SMART finulus 440 489 IPR011598 GO:0046983
Lapu6g01927 611 FunFam Transcription factor bHLH13 427 501 - -
Lapu6g01927 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Lapu6g01927 611 PANTHER MYC 39 594 IPR045084 GO:0003700|GO:0006355
Lapu6g01927 611 MobiDBLite consensus disorder prediction 385 445 - -
Lapu6g01927 611 Coils Coil 480 500 - -
Lapu6g01927 611 CDD bHLH_AtAIB_like 431 496 - -
Lapu6g01927 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 434 483 IPR011598 GO:0046983
Lapu6g01927 611 Gene3D - 427 499 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01927 Lapu-Chr6 19160836 19163564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01927 5 611 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.206 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g01927 bHLH-MYC_N 6e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01927 - - gmx:100801502 971.844