Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01926 ATGGACCATCAACCCCCACCCTGCCCCGACGACGACCCAACCGCCACCAACGCCACCCCGAGGTCCGGCACACGCCACCCCGTCTACCGCGGCGTCCGCAAACGCCGCTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCGCGCAAGAAGAACCGCATATGGTTGGGGTCTTTTCCAGTGCCAGAGATGGCGGCGCGAGCATACGACGTCGCCGCGTACTGCCTCAAGGGCCGGAAGGCGCAGCTCAACTTTCCCAACGAGGTGGACTCCCTGCCGCTTCCGCCGTCCCGCACGGCCAGGGACATTCAGGCCGCTGCGGCCCAGGCGGCGCGCATGATGAAAGCGGCCGGAAGTGACGAGAAAAGCAGTATTGCCGATGATGACGGAGACAGCGGCGGCGACGATTTTTGGGGAGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGCTGCTGGAGTTGCCCCGGGGGATCCTCGTGGACTACCTCTGGCGAAATCGCTGATTGGACGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTCCTGGCGTGTCTATAA 558 0.6398 MDHQPPPCPDDDPTATNATPRSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPNEVDSLPLPPSRTARDIQAAAAQAARMMKAAGSDEKSSIADDDGDSGGDDFWGEIELPELMDGECCWSCPGGSSWTTSGEIADWTEEELSPQQPSFLACL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01926 185 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Lapu6g01926 185 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Lapu6g01926 185 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lapu6g01926 185 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Lapu6g01926 185 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Lapu6g01926 185 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lapu6g01926 185 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lapu6g01926 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 145 - -
Lapu6g01926 185 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lapu6g01926 185 MobiDBLite consensus disorder prediction 117 137 - -
Lapu6g01926 185 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Lapu6g01926 185 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01926 Lapu-Chr6 19139671 19140410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01926 1 185 AP2-EREBP Transcription Factor Family AT1G01250 51.724 8.83e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g01926 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01926 K09286 - gmx:100819971 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01926 6 19139671 19140410 Lapu10g00251 10 4581488 4583939 PCT