Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01924 ATGGCACATCTGGAAGCTGCCGTCAGAAGTGTGCCCAGTTCTCGGCCGGAAACAGGTGTGGGAGATGGTGATCTGTACACGCAGCTATGGAGGCTATGTGCGGGGCCTTTGGTGGATGTTCCTTGCGAAGGGGAGAGAGTTTTCTACTTTCCGCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAGGGACAGAACCCGGAGCTGAGCCAGCAAATTCCTCATTTCAATCTCCCGCCCAAGATTCTCTGTCGTGTTGTTCACATTCAGTTGTTGGCGGAACAAGAAACAGATGAAGTTTATGCTCGTATAACTTTGCTTCCGGAGTCAAATCAAGATGAGCCAACGAGTCCAGACCCAAGTCTACCCGAGACCCAGAAACAGAGTTTTCACTCTTTTAGTAAGATATTAACTGCTTCTGATACTAGCACTCATGGAGGATTTTCAGTTCTGCGGAGGCATGCTACGGAGTGTCTGCCTCAGTTGGACATGACCCAAACTACCCCCACTCAGGAATTGACAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAGCCAAGGAGGCACTTGCTCACAACTGGCTGGAGTACATTTGTCACGTCCAAGAGACTTGTTGCTGGAGATGCTTTTGTGTTTCTAAGGGGAGAGAATGGCGAACTAAGAGTTGGTGTTAGGCGTGTAGCTCGACAGCAAAGTCCCATGCCTTCTTCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACCAGTACCATGTTTGTGGTGTATTACAAACCTAGGACTAGCCAGTTTATTATTGGACTAAACAAATATCTGGAGGCAGTCAACAACAAGTTTTCAGTTGGCATGCGCTTCAAGATGAGATTTGAGGTGGAGGATTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCCGGATGGCGGAACTCTCCCTGGCGTTCACTGAAGGTTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTCGTTGCTTCCACTGCTATGAATGTCACTCAACAGGTGGTGAAGAGCAAAAGGTCCAGGCCTGCCGAGGTTTCGTCTTCTGAAATTGGCCCTAATTCCCCTGCTGCTGCTTTGTGGTATCATGGACAATCCTTATCCCATGACCCTACAGCATTGGGTGGCAGTTCAGAGGTCCAAAGCAATGAAAGCCCAGTTATATGGTCTACAAGGACGAAAGAAATTAATGTGAATCCTATGAATGGTAACAAGAGCAGCTCCACCAGAGTCCGTGTGGAAGGAATGTGGCCTTCTTCCCCACATTTGAGTGTCTCTTCCAACCTTTTTCCGGACCCCAAAAACAGCAAAGCTGTCACAGCACAATCAACTGTCTCTGGGTATGCCCCTGTTTCATCTAGGCCGAATGATGATTTGGCACATGATCCCGTGGAATGTGGTAAAAGAAGTGAGAATCCCATGGACTGTTGGGTATTTGGAGTTAATTTGACTAATAATTTTACTAATGTTGCCCTTCCGGATAAAGAACTGGGATGTCCAGCTATAATAATTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAATTCAGCCTGGTCAGAATCCCAATTATTCACTGTCCAATAAGGTGCAGAAGCAAATTATTTCTGATGGATCACCCAGTGAGAGACACGCCAAGCAGGCCACAGTACCATCCACCAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAGTTGACCTTACTGTCCTAAAAGATTACGAGGCTCTCATTGATGAGCTTGAGAAAATTTTTGATATCAAGGGAGAGCTTAGAATGCAGACCAAATGGGCTATTACTTTCACTGATGATGAAAATGACATGATGCTCGCTGGTGATGATCCATGGCCTGAGTTCTGTTCTATGGCGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAATAAGTTGAAAAGCAAGCATCCTGCTTGTTCATCGGAGGGTGAGGAGACTTTGTTGAGCCAAGATTCACAGAATAGGGAGGAAACTCAGCAAATCTCTTGCGATTTGACAGCTTAA 2157 0.4641 MAHLEAAVRSVPSSRPETGVGDGDLYTQLWRLCAGPLVDVPCEGERVFYFPQGHMEQLQASTNQGQNPELSQQIPHFNLPPKILCRVVHIQLLAEQETDEVYARITLLPESNQDEPTSPDPSLPETQKQSFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELTAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLEAVNNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWRNSPWRSLKVQWDEPAIIPRPERVSSWEIEPFVASTAMNVTQQVVKSKRSRPAEVSSSEIGPNSPAAALWYHGQSLSHDPTALGGSSEVQSNESPVIWSTRTKEINVNPMNGNKSSSTRVRVEGMWPSSPHLSVSSNLFPDPKNSKAVTAQSTVSGYAPVSSRPNDDLAHDPVECGKRSENPMDCWVFGVNLTNNFTNVALPDKELGCPAIIIPSGPKDSIPVAACEIQPGQNPNYSLSNKVQKQIISDGSPSERHAKQATVPSTRTRTKVQMQGVAVGRAVDLTVLKDYEALIDELEKIFDIKGELRMQTKWAITFTDDENDMMLAGDDPWPEFCSMAKRIFICSREDVNKLKSKHPACSSEGEETLLSQDSQNREETQQISCDLTA* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01924 718 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Lapu6g01924 718 MobiDBLite consensus disorder prediction 1 20 - -
Lapu6g01924 718 SUPERFAMILY CAD & PB1 domains 592 672 - -
Lapu6g01924 718 Gene3D - 295 368 - -
Lapu6g01924 718 SMART B3_2 134 236 IPR003340 GO:0003677
Lapu6g01924 718 MobiDBLite consensus disorder prediction 694 718 - -
Lapu6g01924 718 Gene3D - 131 235 IPR015300 -
Lapu6g01924 718 MobiDBLite consensus disorder prediction 109 128 - -
Lapu6g01924 718 SUPERFAMILY DNA-binding pseudobarrel domain 121 263 IPR015300 -
Lapu6g01924 718 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Lapu6g01924 718 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu6g01924 718 FunFam Auxin response factor 132 236 - -
Lapu6g01924 718 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu6g01924 718 Gene3D - 592 684 - -
Lapu6g01924 718 ProSiteProfiles PB1 domain profile. 596 677 IPR000270 GO:0005515
Lapu6g01924 718 MobiDBLite consensus disorder prediction 690 718 - -
Lapu6g01924 718 MobiDBLite consensus disorder prediction 110 128 - -
Lapu6g01924 718 Pfam AUX/IAA family 584 681 IPR033389 -
Lapu6g01924 718 CDD B3_DNA 132 234 IPR003340 GO:0003677
Lapu6g01924 718 FunFam Auxin response factor 295 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01924 Lapu-Chr6 19091375 19097039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01924 21 683 B3 DNA Binding Superfamily AT4G23980 56.456 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu6g01924 B3 5.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01924 K14486 - gmx:100820503 1110.52