Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01921 ATGGGCTTCCATGCTGATGAGGCAAAGACGAGTATGCAACATCAACCTTGTGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAGATGCGTACTTGCTCCATATTTCCCAACTGATGAGGTTGAGAATTTTGCTGCGGTGCATAGAGTGTTCGGTGCTAGCAACGTTGTCAAAATGATTCAGATGGTTGAGGAAACAAAGAGAGAGGATGCAGTTAAATCCATGGTGTACGAGGCGACAGCAAGGCTTAGAGACCCAGTTTATGGGAGTGCTGGAGCTATTTACGAGTTACAAAAGATGATTGAGGAACTGAAGGCACAGCTGGATTGGATAAAAACACGGGTGACAGAGATGCGAGAAGAAAAGGAGCAGTTGTTGAGTATTGATAACAACTACGATCCTTTATTTGGCGTCAATGAGCCTGTCTTTGATTCTCCTATTGCCTCAGATCCATTTGAATTTCCTGTGGAAGGTGGCTGGGTATACACCAATATCTCAACACCCTCATGCTAG 516 0.4535 MGFHADEAKTSMQHQPCAACRMLRRRCDSRCVLAPYFPTDEVENFAAVHRVFGASNVVKMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGAIYELQKMIEELKAQLDWIKTRVTEMREEKEQLLSIDNNYDPLFGVNEPVFDSPIASDPFEFPVEGGWVYTNISTPSC* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01921 171 Coils Coil 102 122 - -
Lapu6g01921 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Lapu6g01921 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 122 - -
Lapu6g01921 171 Pfam Lateral organ boundaries (LOB) domain 16 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01921 Lapu-Chr6 19064389 19065205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01921 16 134 AS2 family AT1G07900 55.462 1.18e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu6g01921 LOB 4.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01921 - - vra:106754025 270.396