Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01910 ATGCACATCAGGCACAAACTCCACGTCAACTTATTCACCTGTTCCATCATCAATCCACCAAATATGTCAGATCTTATGGAATGTTCTCATTCATCGAATGCAGCAGGCACGAGAAAGAAGAGGACCAAAAACGTAAAAAGGTTCAGCGATGGACAAGTCAAGTCATTGGAATCCATGTTTGAGACTCACTCCAGACTGGAACCCTCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCTGTATGGTTTCAGAACAAGAGAGCTCGATGGAAGTTAAAGCAGATTCAGCGAGACTACACCATACTTCGAGCCAATTATAAGAACTTGGATTCACAGTTTCAGGCTCTCAACAAAGAGCACCAATCCTTGTTAATACAGTTTCAGAATCTGAAAAATCGATTACAAAAGCCCTTAGAACAAACCGAGAGTTGTAGTACAGGATACAAAGCAGCAAAAAGCATGGAGAGTGAAAGGGGGAATGGAGAGACCTTCAAAAGAGAACAGGAGATAAAACAACCAAGCTCGACAACCGAAAGATCAGAAGACATTGTTTGTGGTGTTATCTCGGACTGTGACAGCAGCAGAAAGGCAAACCAATACTTTGGTGTGGAAGATGAACCTTCACTTCTGAAATTTGTCGAGAACACTGATGGTTCTTTGACAACATCAGAACATTGGGGTTTGTTAGAATCAGATGATATCTTGGGCCAATTAACAAGCTGTGATTACCAATGGTGGGACTTTTGGTCCTGA 771 0.4228 MHIRHKLHVNLFTCSIINPPNMSDLMECSHSSNAAGTRKKRTKNVKRFSDGQVKSLESMFETHSRLEPSKKLEVARELGLQPRQVAVWFQNKRARWKLKQIQRDYTILRANYKNLDSQFQALNKEHQSLLIQFQNLKNRLQKPLEQTESCSTGYKAAKSMESERGNGETFKREQEIKQPSSTTERSEDIVCGVISDCDSSRKANQYFGVEDEPSLLKFVENTDGSLTTSEHWGLLESDDILGQLTSCDYQWWDFWS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01910 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 183 IPR045224 GO:0003700
Lapu6g01910 256 CDD homeodomain 38 100 IPR001356 GO:0003677
Lapu6g01910 256 MobiDBLite consensus disorder prediction 161 184 - -
Lapu6g01910 256 Pfam Homeobox associated leucine zipper 99 141 IPR003106 GO:0006355|GO:0043565
Lapu6g01910 256 MobiDBLite consensus disorder prediction 161 182 - -
Lapu6g01910 256 Coils Coil 98 139 - -
Lapu6g01910 256 Gene3D - 26 102 - -
Lapu6g01910 256 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Lapu6g01910 256 FunFam Homeobox-leucine zipper protein ATHB-7 26 99 - -
Lapu6g01910 256 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Lapu6g01910 256 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Lapu6g01910 256 Pfam Homeodomain 46 97 IPR001356 GO:0003677
Lapu6g01910 256 SUPERFAMILY Homeodomain-like 21 100 IPR009057 -
Lapu6g01910 256 SMART HOX_1 37 103 IPR001356 GO:0003677
Lapu6g01910 256 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01910 Lapu-Chr6 18968040 18969910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01910 44 256 Homeobox Transcription Factor Family AT2G46680 44.978 4.49e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu6g01910 Homeodomain 4.6e-15 CL0123