Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01889 ATGTTCGGCTCCACCATCGTGGTCGACCCACTCTCCTTCCGCATTCTCGCTCACTCCGAAAACACTTGCAAAACTCTCGGTATTTCTCCGTTCCCTCTGGGCGGCGCCGACTTTCGCTCTCTCTTCACACTCTCCAGTGCCCTACTCCTCGAGAAAGCCTTCAAAGCACGCGAAATAAACCTCACAAATCCTATCTTAATCCAGTCTGGAACCTCGGGAGAAGCTTTCCACGGCATCCTCCACCGAATCAAGGCGGGGATCGTGGTAGATTTGGAGCCAGCATCGTGGACTGAGAACCCCGTACTTTCAAACTTTGAATGTGGTGGTGGTGGTGATGTTAAGCTTCTCTGCAACACCGTTGCTGAAACTGTAAGAGAAATGACAGGCGATATTCCAGAGGCCTATAGGGTTTCGTTTGTGGAGAACAGGGTGAGGATGATTGTGGATCGTGAGGCTTCTCCTGTGAGGGTGGTGCAGGATGAGAGTGTGGTGGAACCTGTGTGTTTGAGGTTGCATGAGGGACTGGTTATTTGCCACCATGCTTCTCCTAAGCGTGTTTCTTTTCCTTTGAGAAGTGCTTGTGAGTCTGTGGTGCAGGCCTTTGGGGAACGGTTGAAGATGGAGAAACAGAGTCCCACCCCTTCCTTCTCCTTCCCTCTCCAGGAATCTTCTGCTTTGTGCTTCGGTTGA 690 0.5145 MFGSTIVVDPLSFRILAHSENTCKTLGISPFPLGGADFRSLFTLSSALLLEKAFKAREINLTNPILIQSGTSGEAFHGILHRIKAGIVVDLEPASWTENPVLSNFECGGGGDVKLLCNTVAETVREMTGDIPEAYRVSFVENRVRMIVDREASPVRVVQDESVVEPVCLRLHEGLVICHHASPKRVSFPLRSACESVVQAFGERLKMEKQSPTPSFSFPLQESSALCFG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01889 229 Gene3D PAS domain 1 127 - -
Lapu6g01889 229 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 79 179 IPR016132 -
Lapu6g01889 229 SUPERFAMILY GAF domain-like 112 205 - -
Lapu6g01889 229 Gene3D - 128 214 IPR029016 -
Lapu6g01889 229 Pfam PAS fold 2 94 IPR013654 GO:0006355
Lapu6g01889 229 SUPERFAMILY PYP-like sensor domain (PAS domain) 2 95 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01889 Lapu-Chr6 18746511 18747401 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01889 2 210 Histidine Kinase Gene Family AT2G18790 37.188 5.91e-52 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01889 K12121 - vun:114186708 314.309