Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01886 ATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGTCACTCTGTTCATGTTTTGGATCTTCAATGTCGCATCATGTACTGGAACCCTAGTGCCGAAAATCTATATGGCTATGCAGCGGAAGAGGTTCTTGGGCGGGATGGGATTGAGATGCTTGTGGATCCCAGGGATTTTGGTTTGGCCAAAGATGTGTTCAACCATGTCAAAATGGGAGAGAGTTGGAGAGGCCAGTTCCCTGTTAAGAATAAGAAAGGCGATAGGTTCTATGCTGTGGCAACCAATACACCTTTCTAATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCACGGCCCTTTCTTGAAAACAGAATTCCCTTTCTAGGAGCTGAGAGTGCAGAACGTGTATCGGGTTCCAATGGTCGTAGGAGTAGCATTTCAGAAAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTGGCTTCGAAAATTTCAAATTTGGCGTCAAAGGTGAGTAACAAAGTTAAGTATAGAATCCGGATAGGAGAAAACAGTGTCAATCGTGAAGGTGGGAGCGGAGAAAATCGTCATCCTGAGCATTTGTCGGAATGTGCTCTTTCTGACCAGAGAGAAGATGGTAATTCCAGTGGAGCTAGCACACCCAGAGGAGAGGTGCTAAAATCTCCTTTTGGTGTATTTTCTCATGCTGAAGAGAAACCCCTACGGAATACTATGAGAGACTCGAATGATCAGAGTGAAGGAAAACCTATTCACAAGGTCATAACTTCTAAGGCTGAAACATGGATTCAAAAGAAAACATTGTCATGGCCATGGAGAGCAAACGAACAGGAAGGATCTGAGGTAAGGAATGTTCATGTTGCTTCCCCTTGGTTACAGGGTGACCAAGAGAATGAGTCTATTAATCAGAAGAGTCTTTCTTCTGGGCTGAAGCCAGAAAACCAGGCAGGCGAAAATAACCGATATGTTCATAACGAGGCTTCAGGATCTTGGTCCTCATTTGTTAATGTTAACAGCACAAGTAGTAACAGCAGCTGTGGGAGTGGCAGTAGTTGTGCTGCCAATAATAAAGTGGATGTTGACTCCGATTGTTTGGATTATGAAATTTTGTGGGAGGACCTTATTGTTGGAGAACAAATTGGGCAAGGTTCGTGTGGAACTGTATATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATACGCTACTATCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGTCATCCAAATATTATTCTCTTTATGGGGGCTGTGACTTCACCTCAACATTTATGCATTGTGACAGAGTTTCTTCCACGGGGAAGCTTGTTTCGTTTGCTTCAGAGAAACACATCCAAACTAGAGTGGAGACGGAGAGTTCATATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCTATCATTCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGACTTTCCCGTCTTAAACATGAAACGTATCTCACTACTCAGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTATCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATACTGTGGGAACTTACAACTGAAAAGATCCCTTGGGATACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGACTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATTGACAGCTGCTGGCACAGTGATCCAGCTTGCCGACCAACATTCCAGGAACTGGTGGAAAGGCTTAGAGAACTGCAGAGACAGTATGCAATTCAATTCCAGGCAGCTCGATCTGCTGAGGATGGCACTCAAAAGGAGTTCTAG 1968 0.4365 METSISISCSQWVTLFMFWIFNVASCTGTLVPKIYMAMQRKRFLGGMGLRCLWIPGILVWPKMCSTMSKWERVGEASSLLRIRKAIGSMLWQPIHLSNDDGSLVGVICVSCDSRPFLENRIPFLGAESAERVSGSNGRRSSISEKLGLDSQQPLQVALASKISNLASKVSNKVKYRIRIGENSVNREGGSGENRHPEHLSECALSDQREDGNSSGASTPRGEVLKSPFGVFSHAEEKPLRNTMRDSNDQSEGKPIHKVITSKAETWIQKKTLSWPWRANEQEGSEVRNVHVASPWLQGDQENESINQKSLSSGLKPENQAGENNRYVHNEASGSWSSFVNVNSTSSNSSCGSGSSCAANNKVDVDSDCLDYEILWEDLIVGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDTLLSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLEWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTQTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELTTEKIPWDTLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIDSCWHSDPACRPTFQELVERLRELQRQYAIQFQAARSAEDGTQKEF* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01886 655 MobiDBLite consensus disorder prediction 206 220 - -
Lapu6g01886 655 Pfam Protein tyrosine and serine/threonine kinase 380 630 IPR001245 GO:0004672|GO:0006468
Lapu6g01886 655 CDD STKc_MAP3K-like 384 630 - -
Lapu6g01886 655 ProSiteProfiles Protein kinase domain profile. 378 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01886 655 MobiDBLite consensus disorder prediction 298 321 - -
Lapu6g01886 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Lapu6g01886 655 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 197 636 - -
Lapu6g01886 655 SUPERFAMILY Protein kinase-like (PK-like) 368 630 IPR011009 -
Lapu6g01886 655 FunFam PAS domain-containing protein tyrosine kinase family protein 456 647 - -
Lapu6g01886 655 SMART serkin_6 378 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01886 655 Gene3D Transferase(Phosphotransferase) domain 1 456 654 - -
Lapu6g01886 655 MobiDBLite consensus disorder prediction 204 224 - -
Lapu6g01886 655 Gene3D Phosphorylase Kinase; domain 1 371 455 - -
Lapu6g01886 655 PRINTS Tyrosine kinase catalytic domain signature 491 509 IPR001245 GO:0004672|GO:0006468
Lapu6g01886 655 PRINTS Tyrosine kinase catalytic domain signature 538 548 IPR001245 GO:0004672|GO:0006468
Lapu6g01886 655 PRINTS Tyrosine kinase catalytic domain signature 452 465 IPR001245 GO:0004672|GO:0006468
Lapu6g01886 655 PRINTS Tyrosine kinase catalytic domain signature 601 623 IPR001245 GO:0004672|GO:0006468
Lapu6g01886 655 PRINTS Tyrosine kinase catalytic domain signature 557 579 IPR001245 GO:0004672|GO:0006468
Lapu6g01886 655 FunFam PAS domain-containing protein tyrosine kinase 371 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01886 Lapu-Chr6 18714428 18719903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01886 98 647 MAP Kinase Kinase Kinase AT3G06620 63.958 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lapu6g01886 PK_Tyr_Ser-Thr 4.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01886 - - gmx:100815858 943.725