Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01882 ATGCTCCAGGCATTGATGAGTCTTATCGCGCGCTGTTGGAAGCCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTTGCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCCACTCTGGACCCTTCGGCACCTTCGTCGGCGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGATATGTTTGCGATAACTTGTTCCGAAATCTCCAAGCGATATTGGCCGAGTCACAGAGCGTTGTGACATCTGAGGCCATTCAACAGGCGTTCCGGCGGACCGAGGAGGGGTTCACAGCGCTTGTTTCAGAGTTGTGGAACTCCCGGCCGCAAATTGCGACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGAAACACTGGTGGGATGGCTGCGATTCAGCTGTCCACGGAGCACAATGCGAATATTGAGGCTGTTAGGCAAGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTCAAACATGGAGTATGGAGAGTGAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTATTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAACGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAAACTTATAAAGGCTGCCCTACAAGAAGCAGCGAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCGCTCGATCACTGA 1110 0.5045 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIHSGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQAILAESQSVVTSEAIQQAFRRTEEGFTALVSELWNSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANIEAVRQELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTIISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKKLIKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01882 369 Gene3D - 39 354 IPR036457 -
Lapu6g01882 369 Pfam Protein phosphatase 2C 70 315 IPR001932 -
Lapu6g01882 369 FunFam Probable protein phosphatase 2C 42 36 354 - -
Lapu6g01882 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
Lapu6g01882 369 CDD PP2Cc 46 346 IPR001932 -
Lapu6g01882 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Lapu6g01882 369 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Lapu6g01882 369 SMART PP2C_4 39 344 IPR001932 -
Lapu6g01882 369 PANTHER PROTEIN PHOSPHATASE 43 344 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01882 Lapu-Chr6 18678745 18687038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01882 1 366 PP2C-type Phosphatase Gene Family AT4G38520 59.631 1.08e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01882 K01102 - gmx:100813333 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01882 6 18678745 18687038 Lapu6g01882 6 18678745 18687038 ECH
Lapu3g00344 3 3437805 3442421 Lapu6g01882 6 18678745 18687038 PCT