Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01878 ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCTGAACAACGCACCATCCACAACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTTCCAGTCACCCACCATCTTCGACATCATGCCGCCGCATCCCTCGTCTTCTTCCTGCGACCACAAGGCCTCGCCCTTGGGCTTCGTGGACCTGCTCAGCGTCCACGACAACAGCGCGCAGCTGTTCGATTGGCTCCCCGCCGCTACGCCGTCGCGGGCGAGCTCCAACGTGCCGGAGTCTTCGGAGGTGCTGAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCCTCTTCGAATGAGGCGACCGCCACCGCCACCACCACCACCACCGTGGAGCAGAGTGGTAAAGGTGGGATTGAACACGAGGAGGCTGAAGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGATGAGCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCGCCGGTTGCGGCGTCAAGAAGCGCGTGGAGCGTTCCTCCGATGACCCTTCCATCGTCGTTACCACTTACGAGGGACAGCACTCGCATCCTTGCCCTGCTTCGTCTCGGGCTAGCTTCGGGTTCGTGCACGAGCCTGGTGGGTTGGGACATGCCGGTTCCTCACACTTCGTGCTGCCACATCAGCACCAACACCAACACCAACACCAACCACAAGCTTCGGCTTTGATATATAACTCCACCCCTCCTTTTGTTAACCCCGCTAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCAGGACCACGCGAACCGTCGAGGTTTGGGACACGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTAA 1062 0.5546 MAEEKREEEAHLNNAPSTTMAFSDEIPNNFTFPFQSPTIFDIMPPHPSSSSCDHKASPLGFVDLLSVHDNSAQLFDWLPAATPSRASSNVPESSEVLNTPASPNLSSISSSSNEATATATTTTTVEQSGKGGIEHEEAEAEEEEEGGNGGRDEQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHSHPCPASSRASFGFVHEPGGLGHAGSSHFVLPHQHQHQHQHQPQASALIYNSTPPFVNPASNFMNTTSFGGFGQDHANRRGLGHEALLRDNGLLQDIIVPSQVRKEEKD* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01878 353 MobiDBLite consensus disorder prediction 83 179 - -
Lapu6g01878 353 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g01878 353 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01878 353 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01878 353 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01878 353 MobiDBLite consensus disorder prediction 83 129 - -
Lapu6g01878 353 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g01878 353 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g01878 353 FunFam WRKY transcription factor 57 175 249 - -
Lapu6g01878 353 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 284 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01878 Lapu-Chr6 18607347 18609154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01878 159 350 WRKY Transcription Factor Family AT5G49520 53.659 4.18e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g01878 WRKY 1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01878 - - gmx:100812252 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01878 6 18607347 18609154 Lapu6g01878 6 18607347 18609154 ECH
Lapu6g01878 6 18607347 18609154 Lapu3g00350 3 3517831 3519650 PCT