Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01877 ATGACTTCAGGCAAAAACTGTAGTGTGAAAGACTTTGATGCTGAGACTTTTCAGTTCTGCAGTGGTTTTCGATTCCCCTGGCCAGTGAACCATGTTTCATCAAGCCCAGATGGAAAAATATTTGTAGCTGTGGGAGACGACCCGCAAGGGAAATTAGTGGATGCTAAAAGTGGAATGATCATTGATTCTATCAGAGGGCACTTTGGTTACACACGTTCATCTGCATGGTATCCAAATAGTGACTATAATTTTGACACTGGAAACCAAGACAGAACATGTCGCATTTGGGATGCTCGGAATTTGTCAACGTCTGTTTATGTTCTTGAGGGCAATGTGAGAGCTATCACTTCAATATGCTTCACATCTGATGGAGAGTTTATGGCAATGGGTGAAGACCTTGATTATGTGCATCTCTATAATGTGTTTGACGAGTTTGAGACGAAGCAGGAGATCGATATTGTTGGGCATATATCTGGTTTATCTTTTAGTCCTGACAAAAAATCTCTTTTTATTGGCGTTTCCATGGATTGCTTTCCTACCCACTTAAAGTTCAGCCGATGCAGCGAATATGATTCTGATTGA 582 0.4107 MTSGKNCSVKDFDAETFQFCSGFRFPWPVNHVSSSPDGKIFVAVGDDPQGKLVDAKSGMIIDSIRGHFGYTRSSAWYPNSDYNFDTGNQDRTCRIWDARNLSTSVYVLEGNVRAITSICFTSDGEFMAMGEDLDYVHLYNVFDEFETKQEIDIVGHISGLSFSPDKKSLFIGVSMDCFPTHLKFSRCSEYDSD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01877 193 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 190 - -
Lapu6g01877 193 Gene3D - 1 189 IPR015943 GO:0005515
Lapu6g01877 193 SUPERFAMILY WD40 repeat-like 2 172 IPR036322 GO:0005515
Lapu6g01877 193 ProSiteProfiles Trp-Asp (WD) repeats profile. 64 106 IPR001680 GO:0005515
Lapu6g01877 193 SMART WD40_4 57 97 IPR001680 GO:0005515
Lapu6g01877 193 SMART WD40_4 13 54 IPR001680 GO:0005515
Lapu6g01877 193 SMART WD40_4 101 140 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01877 Lapu-Chr6 18595479 18597767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01877 29 172 Eukaryotic Initiation Factors Gene Family AT2G46290 26.708 7.14e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01877 - - pvu:PHAVU_006G119200g 365.155