Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01859 ATGATCGTGAGTCAGAACATGGTCGCAGAAACGGAAATTATCTGCCAGAAGGGCATTCCCATGCTGGACGTGAAGTACCACCTTTGCGTGGCGCAAGAACACGGCGTTAAGGTTGAGGTTTCGCCCACCTCCAACGCTGTTCCCATCTTCGGTCATGTGAGGATTGCAGCTGAATCTGTTTCTACCGAAACGACTCGTTTTGAATCGGTTGTGAGTTGCCCTGAGATGATCGAAGATTCCAGTTTGGAGGCTCCTGCTACCAAGTTTACACCAGATGTCCGATCTGGCTGGTATGCTGATATTGGACCCAGGGGATCAATGGATGATGAGCACATTCAGATAGATGATCTTGCTGCCCACCTTGGATTCGTCTTTGAGCATCCTATGAAAAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCCTTTGTTAAAAACAATGCTATGAGATTATTTTTTGAAGATGCTTATATGCTGCAATCGTATGATGCGGATACAATTTTTCTGAAGAGGTTGGAAGATTCTCATCGAAAGGCGTTTTTGGGAGCAGACCTTGCCTTGGCTGATGAACAAAGTGTTAGTAGTTCCTGTGGAACAACCGCGTTGACTGCTCTTGTACTCGGAAGGCATTTGATGGTTGCTAATGCTGGGGACTGTAGAGCTGTTCTTTGTAAGCGAGGAGTAGCTGTTGATATGTCCCAAGATCACAGACCAAGTTATTTACCAGAACGTAGGAGAGTGGAGGAGATGGGTGGTTTTATTGATGATGGGTATCTCAATGGTTATCTTTCTGTGACTCGTGCCCTTGGGGATTGGGACTTGAAATTTCCTCTTGGATCGGTGTCGCCTCTCATTGCTGACCCGGAGGTTCAGGTGGTCACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGGATTTGGGATGTAATGTCAAGCCAGGATGCTGTTAGTCTGGTGCGGCGTGGATTAAGAAAGCATGACGACCCTCAGCAATGTGCCAGAGAGCTAGTAAAGGAAGCTTTGCGCCTACACTCAGCAGATAATCTTACTGCGATTGTTATCTGCTTGTCCCCTGTCCAGATTGTCGAATCATGTTCACCCCAAAGGCGAAGATTCAGATATTGCTCTCTGTCTGAAGAGGCCCGGAACAGGTTGAGGAGCTTGCTAGAGGGAAACTGA 1203 0.4722 MIVSQNMVAETEIICQKGIPMLDVKYHLCVAQEHGVKVEVSPTSNAVPIFGHVRIAAESVSTETTRFESVVSCPEMIEDSSLEAPATKFTPDVRSGWYADIGPRGSMDDEHIQIDDLAAHLGFVFEHPMKSAFYAVFDGHGGPDAAAFVKNNAMRLFFEDAYMLQSYDADTIFLKRLEDSHRKAFLGADLALADEQSVSSSCGTTALTALVLGRHLMVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEEMGGFIDDGYLNGYLSVTRALGDWDLKFPLGSVSPLIADPEVQVVTLTEEDEFLIIGCDGIWDVMSSQDAVSLVRRGLRKHDDPQQCARELVKEALRLHSADNLTAIVICLSPVQIVESCSPQRRRFRYCSLSEEARNRLRSLLEGN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01859 400 Gene3D - 78 368 IPR036457 -
Lapu6g01859 400 ProSiteProfiles PPM-type phosphatase domain profile. 94 364 IPR001932 -
Lapu6g01859 400 SMART PP2C_4 84 362 IPR001932 -
Lapu6g01859 400 SUPERFAMILY PP2C-like 90 366 IPR036457 -
Lapu6g01859 400 CDD PP2Cc 98 364 IPR001932 -
Lapu6g01859 400 Pfam Protein phosphatase 2C 104 356 IPR001932 -
Lapu6g01859 400 PANTHER PROTEIN PHOSPHATASE 2C 81 362 IPR015655 GO:0004722|GO:0006470
Lapu6g01859 400 SMART PP2C_SIG_2 109 364 IPR001932 -
Lapu6g01859 400 FunFam Probable protein phosphatase 2C 22 78 367 - -
Lapu6g01859 400 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01859 Lapu-Chr6 18374130 18376706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01859 1 399 PP2C-type Phosphatase Gene Family AT1G48040 56.716 9.56e-149 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01859 K14803 - gmx:100798957 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01859 6 18374130 18376706 Lapu6g01859 6 18374130 18376706 ECH
Lapu3g00372 3 3725914 3727810 Lapu6g01859 6 18374130 18376706 PCT