Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01854 ATGTCGTACCATTGGATTCATGCACCATTCATAGATCTTATATCTTGCCATATATTCTCATTTCAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTAGCAATTGCCAAAACTGGCTCTGGGAAAACATTGGGTTATTTAATCCCCGCCTTTATTCTTCTAAGACAGCGACACAATAATTCTCTAAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCATAATGAGGTTATCAAGTTTGGTCGATCATCCCGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGGCCTTCAATTAAAGGAGTTAGATCGGGGAGCAGACATTGTCGTTGCCACACCCGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCATTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGGATGAGATTCCAGCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGAACTTCTAGTTAATCCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCTATCACGCAGTATGTTGAAGTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAGCAGATACTCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTATGTGATCAGCTAGCTCGTAATATTGGCCGCACTTTTGGGGCTGCTGCGATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATCAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGGCATCAAACTTTGGAAAAGAACGGGGCGGGATGAGTCGGTTTGATTCTGGCGGTGGGCGATGGGAGACTGGTGGTCGTGGTAGCATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGAATTAGGGATGGTGATAGTCGTAGCCCAGAAAGAGTTCGGACATGGGATTATAGCAGAAGTAGCAGCAGAAGCCGTAGTAGAAGCAGGAGCAGGAGTTGGAGCAGGGGTCGTAGTCGCAGTCGCAGTCGCAGCTGGTCTCGTGGGCGAAGTTACAGTCGCAGCCCTAGCCGCAGCAGGAGCCGTAGCAGAAGCCGCAGCCGCAGCCGAAGTTATGATAGGCGTGATAGGTCAGTTCAACAACTTCCTGATCAAAAGGATCTTAGGGCACAGGAAGTAGGATCTTCTGATCCAAGAATGCTTCCCTTGTCTCCTGGTCCTGGCACACAAGGGAATTCCTCGTTGGGAACTGAACAAGGGGAGCAGCAACCTGTTGTTGTTAGCTCTGATCCAGGTAATCCAGAAGCTGTAGCAGACCTCAGTCATCAATCAGCTTCTGGTGTTTAG 1728 0.4716 MSYHWIHAPFIDLISCHIFSFQIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNPVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGASNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGIRDGDSRSPERVRTWDYSRSSSRSRSRSRSRSWSRGRSRSRSRSWSRGRSYSRSPSRSRSRSRSRSRSRSYDRRDRSVQQLPDQKDLRAQEVGSSDPRMLPLSPGPGTQGNSSLGTEQGEQQPVVVSSDPGNPEAVADLSHQSASGV* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01854 575 Gene3D - 14 216 IPR027417 -
Lapu6g01854 575 Gene3D - 217 389 IPR027417 -
Lapu6g01854 575 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Lapu6g01854 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 213 IPR014001 -
Lapu6g01854 575 MobiDBLite consensus disorder prediction 496 510 - -
Lapu6g01854 575 Pfam Helicase conserved C-terminal domain 239 347 IPR001650 -
Lapu6g01854 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 386 IPR001650 -
Lapu6g01854 575 MobiDBLite consensus disorder prediction 452 474 - -
Lapu6g01854 575 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 386 - -
Lapu6g01854 575 SMART ultradead3 27 230 IPR014001 -
Lapu6g01854 575 MobiDBLite consensus disorder prediction 393 575 - -
Lapu6g01854 575 FunFam ATP-dependent RNA helicase RhlB 217 390 - -
Lapu6g01854 575 MobiDBLite consensus disorder prediction 431 451 - -
Lapu6g01854 575 MobiDBLite consensus disorder prediction 533 556 - -
Lapu6g01854 575 Pfam DEAD/DEAH box helicase 32 202 IPR011545 GO:0003676|GO:0005524
Lapu6g01854 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 362 IPR027417 -
Lapu6g01854 575 CDD SF2_C_DEAD 227 356 - -
Lapu6g01854 575 SMART helicmild6 263 347 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01854 Lapu-Chr6 18320972 18328852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01854 23 390 Eukaryotic Initiation Factors Gene Family AT3G19760 33.962 6.49e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01854 K12823 - gmx:100807830 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01854 6 18320972 18328852 Lapu6g01854 6 18320972 18328852 ECH