Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01853 ATGAGCATGGAAGCTGATGCTACCACCACTCCACAGTTACCACTTGCCGACACAGACATCAACTGGGACAGGTTGGACAAAACCAAGTTCCACGTGATCGGTGCCATTTTATTTACCGCTCAATCCGGCCTGCTTCATCCAACGGCGGTGGTGAAGACACGAATGCAAGTGGCGGGGTCGGGGCTCTCGCACGTGCGAGGAACGTCGGTGCTGACCCACATTCTGCGGAGCGACGGCGTTCCGGGAATATTCAGAGGCTTCGGCACTTCCGCGGTTGGTTCAATCCCCGGTAGGGTTCTGGCGCTGACGTCTCTGGAAGTCTCCAAGGACATCATCCTGAAACACACGCAAGCCACTCACATTCCAGAAGCTTCTCGCGTTGGCCTCGCTAACGCACTCGCTGGCATGCTCTCTAACTTGGTTTCCTGCGTCTACTTCGTGCCCTTGGATGTGATTTGTCAGAGGTTGATGGTGCAGGGTCTTCCTGGGACAACGTTTTGTAGAGGGCCGTTTGATGTTGTTCGGAAAGTTGTGGAGGCTGAGGGGTTTCGTGGCTTGTATAGGGGTTTTGGTTTAACGGCGATTACGCAGTCCCCTGCTTCTGCACTTTGGTGGGGTTCGTATGCTGCCGCACAACACCTAATTTGGAGGAGTTTGGGCTACAAAGATGATGCGGGTAAGAAACCTTCACATGTGGGAATGGTGACAGTTCAGGCTAGTGCTGGGATGGTGGCTGGTGCTTGTTCATCTGTTATCACTACTCCCATAGATACTGTGAAAACACGTCTTCAGGTGATGGACAACTATGGTTCTGAAAGACCATCAGTACTGAAGACAGCAAAGATTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGGGGGTTTGGACCAAGATTTTTAAACATGTCACTTTATGGAACAACCATGATTGTTACTTATGAACTGATAAACAATATGGGTTTGTCTTTTGGCAAGCTTTTCTCTCGTCTATGCGCTAAGAAGGAGATGCGAATTCTTATGGTTGGTCTTGATGCCGCTGGTAAAACCACAATATTATATAAACTGAAGTTAGGGGAGATTGTCACCACCATTCCTACTATTGGATTTAACGTGGAGACTGTGGAGTATAAGAACATTAGCTTTACTGTGTGGGATGTTGGTGGTCAAGATAAGATTCGTCCCTTGTGGAGACACTACTTCCAAAACACACAAGGGCTTATTTTTGTGGTAGACAGCAATGATCGTGATCGTGTTGTTGAGGCTAAAGATGAGTTGCACAGGATGCTGAATGAGGATGAATTAAGAGATGCTGTGTTGCTTGTTTTTGCAAACAAGCAAGATCTTCCTAATGCAATGAACGCTGCTGAAATCACTGATAGGCTTGGTCTAAACTCTCTGCGCCAGCGCCACTGGTACATCCAAAGTACATGTGCTACATCTGGTGAAGGTTTATATGAAGGACTAGACTGGCTTTCAAACAACATTTCAAGCAAGGCTTCCTTTAAATAG 1512 0.4755 MSMEADATTTPQLPLADTDINWDRLDKTKFHVIGAILFTAQSGLLHPTAVVKTRMQVAGSGLSHVRGTSVLTHILRSDGVPGIFRGFGTSAVGSIPGRVLALTSLEVSKDIILKHTQATHIPEASRVGLANALAGMLSNLVSCVYFVPLDVICQRLMVQGLPGTTFCRGPFDVVRKVVEAEGFRGLYRGFGLTAITQSPASALWWGSYAAAQHLIWRSLGYKDDAGKKPSHVGMVTVQASAGMVAGACSSVITTPIDTVKTRLQVMDNYGSERPSVLKTAKILLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELINNMGLSFGKLFSRLCAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAKDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDRLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKASFK* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01853 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Lapu6g01853 503 Pfam ADP-ribosylation factor family 326 496 IPR006689 GO:0003924|GO:0005525
Lapu6g01853 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 497 IPR027417 -
Lapu6g01853 503 SMART sar_sub_1 320 496 IPR006689 GO:0003924|GO:0005525
Lapu6g01853 503 SMART rab_sub_5 337 470 - -
Lapu6g01853 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Lapu6g01853 503 FunFam ADP-ribosylation factor 1 320 500 - -
Lapu6g01853 503 Pfam Mitochondrial carrier protein 237 320 IPR018108 -
Lapu6g01853 503 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Lapu6g01853 503 Pfam Mitochondrial carrier protein 33 115 IPR018108 -
Lapu6g01853 503 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
Lapu6g01853 503 Gene3D - 325 502 IPR027417 -
Lapu6g01853 503 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 334 - -
Lapu6g01853 503 NCBIfam small GTP-binding protein domain 335 462 IPR005225 GO:0005525
Lapu6g01853 503 Gene3D Mitochondrial carrier domain 114 322 IPR023395 -
Lapu6g01853 503 CDD Arf1_5_like 337 495 IPR045872 GO:0003924
Lapu6g01853 503 PRINTS GTP-binding SAR1 protein signature 366 390 IPR006689 GO:0003924|GO:0005525
Lapu6g01853 503 PRINTS GTP-binding SAR1 protein signature 438 459 IPR006689 GO:0003924|GO:0005525
Lapu6g01853 503 PRINTS GTP-binding SAR1 protein signature 393 418 IPR006689 GO:0003924|GO:0005525
Lapu6g01853 503 PRINTS GTP-binding SAR1 protein signature 338 361 IPR006689 GO:0003924|GO:0005525
Lapu6g01853 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 111 IPR018108 -
Lapu6g01853 503 SMART arf_sub_2 320 500 - -
Lapu6g01853 503 ProSiteProfiles small GTPase Arf family profile. 330 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01853 Lapu-Chr6 18309172 18318858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01853 17 336 Chloroplast and Mitochondria Gene Families AT5G15640 47.826 2.36e-99 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01853 K15121 - gmx:112997745 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01853 6 18309172 18318858 Lapu6g01853 6 18309172 18318858 ECH