Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01790 ATGGCACTTTCTTTGCACAAGGACTCAGCCAACAACCAGATGGATTCAAGCAAGTATGTTAGGTACACACCTGAGCAGGTTGAGGCTTTGGAGAGGGTGTATGCTGAATGTCCCAAGCCAAGTTCTTTGCGGAGGCAGCAACTCATCAGAGAGTGCCCCATCCTTTCCAATATTGAACCTAAGCAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAAGCATCTCGGCTGCAGACAGTGAACAGAAAGCTGACTGCGATGAACAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTCTACGAGAACGGATATATGAAGCAACAGATACAAACTGCCTCTGCTGGCACCACAACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAATCAACAGCAAAACCCAACACCTCAGCATCCCAATAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAACCCACTAAGGTTGCTGAGATTCTTAAAGATCGGCAGTCGTGGTATCGTGACTGCCGATGTGTGGAAGTATTGAGTATAGTTCCCACAGGGAATGGGGGCACCATTGAGCTCATGTACATGCAGACATATGCGCCCACAACATTGGCAGCAGCACGGGACTTTTGGACACTCAGATACACGACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACATCCTCAACTGGTGGCCCCACAGGGCCTCCTTCCACGACCTTCATTAGAGCTGAAATGCTTCCCAGTGGTTATCTGATTAGACCGTGTGAGGGTGGTGGATCCATTATTCACATAGTTGATCATATTGATTTAGATGTATGGAGTGTTCCTGAAGTACTGAGGCCCCTGTATGAATCATCGAAAATCTTGGCTCAGAAATTGACCATTGCTGCCTTGCAACATATAAGACAGATAGCACAAGAATCGAGTGGAGAAATTCAGTATGGTGGGGGACGCCAGCCTGCTGTGTTGAGGACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGATTTGTTGATGATGGTTGGTCGCTGATGGGTACTGATGGGGTGGAAGATGTGACTATAGCTATAAACTCTTCTCCGAACAAATTTTTGGGGTCCAACTACAATGCTTCCATGTTCCCAGCATTTGGAGGTGGGGTATTGTGTGCCAAGGCATCGATGCTCCTGCAGAATGTTCCACCTGCTTTGCTTGTTCGTTTTTTGAGAGAGCATCGATCAGAATGGGCTGATCACGGGGTTGATGCATACTCTGCTGCATGCCTTAAAGCTAGTCCCTATGCAGTTCCCTGTGCAAGACCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAGCATGAAGAGTTCCTGGAGGTGGTTCGCATTGAGGGTCATGCATTTTCTCCTGAGGATGTCGCGTTGGCACGTGATATGTATCTGTTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGACGAGTCCTTTGCAGATGATGCTCTGTTACTGCCATCTGGTTTTCGTGTCATTCCACTAGATCCTAAATCAGTTGAGTGGCATTTGTTTGATGGCCCAGCTGCAACTCGGACATTAGATTTGGCATCAACAATGGAAGTAGGATCTGCTAATGCTCGTCCAGCCGGTGAAGCTGATTTGAACGGGTACAACCTTCGGTCGGTGCTTACTATTGCTTTCCAATTTACCTTCGAAAATCATACGCGGGACAATGTTGCTGCTATGGCTCGCCAGTATGTGCGTAGTGTTGTTGGATCTGTTCAGAGAGTCGCCATGGCAATTGCTCCTTCCAGGCTTAGTTCTCAGCTGGGACCAAAGTCACTTCCTGGTTCCCCAGAGGCCCTTACCTTAGCACGATGGATCTGTAGAAGCTATAGGATCCACACTGGAACTGAGCTTTTTAGAGCGGAGTCCACCGCAGGCGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCTCCAGTGTTCACCTTTGCCAATCAAGCTGGGTTAGACATGCTTGAAACTACTCTAGTCGCACTTCAAGACATAATGCTTGATAAAGTTCTTGATGAATCTGGCAGGAAGATTCTTTGCTCCGAGTTCTCCAAGATAATGCAACAGGGTTTTGCTTATCTACCAGCAGGGATATGTGTATCAAGTATGAATCGGCCAGTGTCTTATGAGCAGGCTATTGCATGGAAAGTCCTGAATGATGATGATTCTAATCACTGCTTAGCCTTCATGTTTATGAGTTGGTCTTTTGTATGA 2559 0.4721 MALSLHKDSANNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAGTTTDNSCESVVMSGQNQQQNPTPQHPNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPSTTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGTDGVEDVTIAINSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADHGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSVEWHLFDGPAATRTLDLASTMEVGSANARPAGEADLNGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSSQLGPKSLPGSPEALTLARWICRSYRIHTGTELFRAESTAGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMSWSFV* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01790 852 FunFam homeobox-leucine zipper protein ATHB-15 202 383 - -
Lapu6g01790 852 SUPERFAMILY Bet v1-like 167 378 - -
Lapu6g01790 852 SUPERFAMILY Bet v1-like 414 607 - -
Lapu6g01790 852 SMART START_1 166 376 IPR002913 GO:0008289
Lapu6g01790 852 MobiDBLite consensus disorder prediction 128 160 - -
Lapu6g01790 852 Gene3D - 185 378 IPR023393 -
Lapu6g01790 852 CDD homeodomain 18 78 IPR001356 GO:0003677
Lapu6g01790 852 Coils Coil 87 107 - -
Lapu6g01790 852 CDD bZIP 70 109 - -
Lapu6g01790 852 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Lapu6g01790 852 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Lapu6g01790 852 SMART HOX_1 15 81 IPR001356 GO:0003677
Lapu6g01790 852 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Lapu6g01790 852 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Lapu6g01790 852 Pfam START domain 167 374 IPR002913 GO:0008289
Lapu6g01790 852 Gene3D - 9 84 - -
Lapu6g01790 852 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 852 IPR044830 GO:0003700
Lapu6g01790 852 Pfam MEKHLA domain 707 851 IPR013978 -
Lapu6g01790 852 MobiDBLite consensus disorder prediction 128 157 - -
Lapu6g01790 852 CDD START_ArGLABRA2_like 161 377 - -
Lapu6g01790 852 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01790 Lapu-Chr6 17690886 17696789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01790 5 852 Homeobox Transcription Factor Family AT2G34710 79.882 0.0 1402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu6g01790 START 1.1e-51 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01790 6 17690886 17696789 Lapu6g01790 6 17690886 17696789 ECH