Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01784 ATGAGGTTTGTTTGTGTTGTAGTAATAGCTCTAGTGGTTGTGCTTGGAGGGTTACCCTTCTCCTCAGATGCACAACTAGACCCCTTCTTCTACAAGAAAACTTGTCCACAACTGCATTATACTGTGTTTGAAGTTGTACAGAAAGTTGCTAAAAGGGATCCTCGTATGCCTGCCAGTCTCATCAGGCTTTTCTTTCACGACTGTTTTGTTCAAGGGTGTGACGCATCGATTTTGTTGAACAACACTGCGACGATAGTGAGTGAGCAACAAGCTCTGCCAAACAACAACTCAATCAGAGGTTTGGATGTTGTGAATGACATCAAAACAGCAGTGGAAAAGATTTGTCCAAACGTGGTTTCTTGTGCAGATATTCTTACCATTGCATCTGAAGTATCTTCTGTTCTGGCTGGTGGTCCTTTCTTTAGATTTCCATTGGGAAGAAGGGATAGTTTAACAGCAAACAGAACCCTCGCAAATCAAAACCTTCCTGCTCCTTTCTTCAGCCTCACTCAACTTAAAGCAGCATTTGCTGCTCAAGGTCTTGACACTACTGATCTAGTTGCACTCTCAGGGGCTCACACATTTGGCAGAGCTCACTGCTTTTTCATTCTTGACCGATTGTACAACTTCAGTGGTACTGGCAAACCCGACCCAACTCTTGACACCAATTACTTGCAACAATTGCGCAGAATATGCCCACAAGGTGGACCTAACAACTTGGTGAATTTTGACCCAACCACTCCTGATACATTCGACAAAAACTATTACTCCAATCTTCAGGCTTTTCCAGGTCATAGGGGCCCTGTTTCTTGTCTGGCTTTTAGGCAGGGAACTTCAGAACTTTTTTCTGGTTCATTTGATAGGACAATTAAAATATGGAATGTTGAAGACAGAACTTACATGAATACTCTATTTGGCCACCAAAGTGAAGTATTAAGTATTGATTGCTTACGCAAAGAAAGGGTACTGACTGCTGGTCGTGATCGTAGCATGCAATTGTTTAAGGTTCATGAAGAGTCACGTCTTGTATTTCGTGCTCCAGCATCCTCTTTGGAATGTTGTTGTTTTGTTAATAATGATGAACTCTTGTCTGGTTCGGATGATGGAAGCATTGAACTTTGGACTGTAATGCGAAAGAAGCCTGTTTACATTTTGAGGAATGCTCATGCTTTGCTGGTCGATAGCATGACATCTGACCAAAAGGACAGTGAAAGAATCCCCAATGGTAACTTAGAAAATGGTTACCACCATCCTGAGAACCATCATTGTATGTCAGTATTCTCATGGGTTAGTGCAGTCACTGTTTGTAGAAATAGTGACCTTGCAGCATCTGGGGCTGGCAATGGTTTTGTTCGATTATGGTCAGTTGAAAGTGATACAAAAGACATTAAATCTATTCATAATGTGCCGTTGGTTGGATTTGTGAATACCCTGGCTTTTGCAAAATCAGCAGAATTCTTAATTGCTGGAGTTGGACAGGAACCTCGTCTAGGAAGGTGGGGACGTAACCCTGAAGCTCGAAATGGAGTTTCAATTCTTCCTCTTAAGTTGTAA 1554 0.4202 MRFVCVVVIALVVVLGGLPFSSDAQLDPFFYKKTCPQLHYTVFEVVQKVAKRDPRMPASLIRLFFHDCFVQGCDASILLNNTATIVSEQQALPNNNSIRGLDVVNDIKTAVEKICPNVVSCADILTIASEVSSVLAGGPFFRFPLGRRDSLTANRTLANQNLPAPFFSLTQLKAAFAAQGLDTTDLVALSGAHTFGRAHCFFILDRLYNFSGTGKPDPTLDTNYLQQLRRICPQGGPNNLVNFDPTTPDTFDKNYYSNLQAFPGHRGPVSCLAFRQGTSELFSGSFDRTIKIWNVEDRTYMNTLFGHQSEVLSIDCLRKERVLTAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVNNDELLSGSDDGSIELWTVMRKKPVYILRNAHALLVDSMTSDQKDSERIPNGNLENGYHHPENHHCMSVFSWVSAVTVCRNSDLAASGAGNGFVRLWSVESDTKDIKSIHNVPLVGFVNTLAFAKSAEFLIAGVGQEPRLGRWGRNPEARNGVSILPLKL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01784 517 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Lapu6g01784 517 SUPERFAMILY Heme-dependent peroxidases 25 294 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 SUPERFAMILY WD40 repeat-like 254 497 IPR036322 GO:0005515
Lapu6g01784 517 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Lapu6g01784 517 PRINTS G protein beta WD-40 repeat signature 442 456 IPR020472 -
Lapu6g01784 517 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Lapu6g01784 517 Pfam Peroxidase 44 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 FunFam Peroxidase 163 267 - -
Lapu6g01784 517 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 Gene3D - 249 517 IPR015943 GO:0005515
Lapu6g01784 517 Gene3D - 26 179 - -
Lapu6g01784 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 384 IPR001680 GO:0005515
Lapu6g01784 517 Pfam WD domain, G-beta repeat 258 294 IPR001680 GO:0005515
Lapu6g01784 517 Pfam WD domain, G-beta repeat 344 374 IPR001680 GO:0005515
Lapu6g01784 517 SMART WD40_4 297 335 IPR001680 GO:0005515
Lapu6g01784 517 SMART WD40_4 337 375 IPR001680 GO:0005515
Lapu6g01784 517 SMART WD40_4 255 294 IPR001680 GO:0005515
Lapu6g01784 517 SMART WD40_4 420 455 IPR001680 GO:0005515
Lapu6g01784 517 FunFam Peroxidase 29 173 - -
Lapu6g01784 517 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lapu6g01784 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 296 - -
Lapu6g01784 517 ProSiteProfiles Plant heme peroxidase family profile. 25 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lapu6g01784 517 CDD secretory_peroxidase 25 267 IPR033905 GO:0004601|GO:0042744
Lapu6g01784 517 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Lapu6g01784 517 PANTHER U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 257 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01784 Lapu-Chr6 17606556 17628597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01784 8 292 Peroxidase AT5G06720 51.399 2.14e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01784 K14793 - gmx:100789947 494.967