Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01777 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACCGCTCCCTCCGCCGCCGCCGCTCCCTCCGGCCCGCTCGTCCAGCACGACTCCTCGGCTGCCGCTTCCGCCGTGTCCAACGGAGGTCCCCCCGCCCCCACCCCCTCCGCAGCCGACCCCGCGGCCGTCAACGTCCCCGGCCGGCGGAGCTTTCGGCAGACGGTGTGCCGTCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGCGGATGCCTGTGTGTCGATTCTTCAGGCTCTATGGAGAGTGTCGAGAACAGGATTGCGTGTATAAACACACGAATGAAGATATCAAGGAGTGTAACATGTATAAGTTGGGATTTTGTCCTAATGGGCCTGACTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTTCCAACAAAGGGGTTCTAGCTATAACCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAACTAATTCTGCAAATCAAGGGGTGACTGGAAAACCATTACCAGCAGAGTCGGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGCCAAATACAAAATGTTGCTAATGGCCAGCCTAATCAAGCCAGTAGATCTGCTACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAACTTCTCAGTTAAATGGTTGAAGTTATGTGAACTGTCTTTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAAAACTTACCCGTGAAGATAAGTAGAGATTGTCAAGAGCTGGAGCCCTCTATTGGAGAGCAACTGGCATCGTTGCTTTATCTGGAGCCGGATGGTGAACTTATGGCTGTTTCAGTTGCAGCCGAGTCTAAACGGGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGGTGTAGGGCCAGCTGGTCAAGGCAGGGGTAGGGGCAGAGGTATGATGTGGCCACCTCATATGCCTCTTGGGCGTGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCTTATGGGCCTGTTGCACCTGATAGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGTGCTTTTGCTCCGTACGGTCCCAGGTTCTCTGGTGATTTTGGAGGGCCCCCAGCAGCTATGATGTTTCGTGGGAGACCCTCTCAACCTGGGATGTTTCCAGGGGGTGGCTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGGATGGGGGTTGCAGGGGCAAATCCACCAAGAGGTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAACACAAATCGTCTTGCCAAAAGGGATCAAAGAACCACTGATAGAAATGATAGGTATGGGTCCGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGACATGCAGTATCAGCAAGGATACAAAGCGAACCAGGATGATCATCCTGCTGTGAACAACTTCCGGAATGATGACAGTGAGAGTGAGGATGAAGCACCTAGGAGGTCAAGACATGGAGAAGGGAAAAAGAAAAGGCGAGGCCCAGAAGATGTCAATACAAACTATAATCATTAG 2091 0.4969 MEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPTPSAADPAAVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYNQQAEKSQLPQGTNSANQGVTGKPLPAESGNAQPQQQVQQSQQQVSQSQIQNVANGQPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVAPDSFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNTNRLAKRDQRTTDRNDRYGSGSEQGKSQDMLSQSGAPDDDMQYQQGYKANQDDHPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01777 696 Pfam YT521-B-like domain 336 391 IPR007275 GO:0003723
Lapu6g01777 696 Pfam YT521-B-like domain 257 319 IPR007275 GO:0003723
Lapu6g01777 696 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Lapu6g01777 696 MobiDBLite consensus disorder prediction 19 61 - -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 431 449 - -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 582 600 - -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 406 470 - -
Lapu6g01777 696 CDD YTH 258 392 IPR007275 GO:0003723
Lapu6g01777 696 Gene3D - 62 124 - -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 621 656 - -
Lapu6g01777 696 Gene3D ph1033 like domains 235 395 - -
Lapu6g01777 696 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 62 123 - -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 606 620 - -
Lapu6g01777 696 ProSiteProfiles YTH domain profile. 257 392 IPR007275 GO:0003723
Lapu6g01777 696 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 36 679 IPR045168 -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 179 251 - -
Lapu6g01777 696 MobiDBLite consensus disorder prediction 657 690 - -
Lapu6g01777 696 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Lapu6g01777 696 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Lapu6g01777 696 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Lapu6g01777 696 SMART c3hfinal6 123 147 IPR000571 GO:0046872
Lapu6g01777 696 MobiDBLite consensus disorder prediction 406 420 - -
Lapu6g01777 696 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
Lapu6g01777 696 MobiDBLite consensus disorder prediction 572 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01777 Lapu-Chr6 17535993 17551609 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu6g01777 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01777 K14404 - gmx:100802826 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01777 6 17535993 17551609 Lapu6g01777 6 17535993 17551609 ECH