Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01762 ATGGCTTATTCAGCCGAACCCTCATCTTCTTTGAGCTTTACTTCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATATGCTCTTCTTACGGCTCTGACCCTGGACCTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCCAACTTGGAGCAGCTGTTGATTGAATCTGATTCTGATTATAGTGATGCTGACATAATTGTGGAAGGAATTCCGGTTCGTGTTCATCGATGTATTCTTGCCTCTAGAAGTAAGTTTTTCCATGATTTATTCAAGAGGGAGAAGGGGTCACCAGAAAAAGAAGGGAAATTGAAGTATAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTAAGTTATGTATATACTGGTAAACTGAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGCATGTGCCCATGATGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTGTCACTTTTCCAGCGACGTCTACTTAACTTTATAGGAAAGGCTCTTGTGGAAGATGTCATTCCAATCCTTATTGTTGCTTTCCACTGTCAATCGAGTCAACTTGTAACTCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACAAAGAGCTTCCCCATGAACTCTCAGGGAAAGTTAAATTGCTACGCCACAACCCTCAGCAAGATGTTGAAAATGATGCCTCTGCACTGGATGCTTTGGCTCTAAAACGAATCACTAGAATACACAAGGCATTGGATTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGATGAAGCCCATGCTCTCCATTATGCTGCAGCCTATTGTGACCCCAAGGTTGTTTCTGAGGTACTTAGTTTGGAGTTGGCTAATGTTAATCTTTGCAATTCCCGGGGGTACTCAGTCCTTCATATTGCTGCCATGCGTAAAGTGCCTTCCATTATAGTATCCTTACTAACGAAAGGGGCTTGTGCATCGGATTTGACTTTTGACGGTCAGAGTGCTGTTAGTATTTGTAGAAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGTACAGGGACAAGAAACAAACAGTGATCGGATATGCATCGATGTTCTTGAAAGAGAAATGCGGAGGAATCCACTGGCCGGGGATACATGTATGTCTTCCCATACCATGGCCGATGACCTCCACATGAAACTACTATACCTTGAGAACAGAGATAGGCTGCGGATTAGATTAATAAGATTGTTTTTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCGCATGCCGAGACAACATCCGAGTTTGCTGGTCTCTCTACATCAAACTCAAAAGTTTCAAATGGCAACTTGAGGGAGGTTGATCTCAATGAGACTCCCATAGTGCAAAATAAAAGACTTCTTTCTAGAATGGAGGCCCTTATGAAAACAGTGGTTTTAAATTCTGAATCTATGTTGTGTGTTGTGGTGGTGGCAGTGGAAATGGGGCGGCGTTACTTCCCACACTGCTCAGAAGTGCTGGACAAGTTCATGGAGGATGATCTGCCTGACTTGTTTTATCTTGAAAAGGGTACTCAAGAAGAGCAGAGAATCAAAAGAACACGGTTCATGGAGCTCAAAGATGATGTCCACAAGGCCTTCAGCAAGGACAAGGCCGAGTTTAGCCGCTCTGGCATTTCATCTTCCTCCTCCTCCTCCTCTCTCAAAGATTCTGTTGTACATTACAAGGCTAGGAAAGTGTAA 1851 0.4263 MAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNLEVISLSKLSSNLEQLLIESDSDYSDADIIVEGIPVRVHRCILASRSKFFHDLFKREKGSPEKEGKLKYNMSDLLPYGKVGYEAFLIFLSYVYTGKLKPSPMEVSTCVDNACAHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGKALVEDVIPILIVAFHCQSSQLVTQCIDRVARSDLDQISIDKELPHELSGKVKLLRHNPQQDVENDASALDALALKRITRIHKALDSDDVELVKLLLNESDITLDEAHALHYAAAYCDPKVVSEVLSLELANVNLCNSRGYSVLHIAAMRKVPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTVQGQETNSDRICIDVLEREMRRNPLAGDTCMSSHTMADDLHMKLLYLENRDRLRIRLIRLFLAFARLFFPSEAKLAMDIAHAETTSEFAGLSTSNSKVSNGNLREVDLNETPIVQNKRLLSRMEALMKTVVLNSESMLCVVVVAVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSLKDSVVHYKARKV* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01762 616 Pfam NPR1/NIM1 like defence protein C terminal 372 602 IPR021094 -
Lapu6g01762 616 SMART ANK_2a 296 326 IPR002110 GO:0005515
Lapu6g01762 616 SMART ANK_2a 330 362 IPR002110 GO:0005515
Lapu6g01762 616 SMART ANK_2a 267 295 IPR002110 GO:0005515
Lapu6g01762 616 Pfam BTB/POZ domain 61 179 IPR000210 GO:0005515
Lapu6g01762 616 SUPERFAMILY POZ domain 51 189 IPR011333 -
Lapu6g01762 616 SUPERFAMILY Ankyrin repeat 258 373 IPR036770 -
Lapu6g01762 616 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Lapu6g01762 616 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Lapu6g01762 616 MobiDBLite consensus disorder prediction 584 616 - -
Lapu6g01762 616 PANTHER REGULATORY PROTEIN NPR3 10 608 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lapu6g01762 616 CDD BTB_POZ_NPR_plant 47 190 - -
Lapu6g01762 616 FunFam Regulatory protein NPR3 38 222 - -
Lapu6g01762 616 FunFam regulatory protein NPR3-like 264 404 - -
Lapu6g01762 616 Gene3D - 264 404 IPR036770 -
Lapu6g01762 616 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Lapu6g01762 616 SMART BTB_4 64 190 IPR000210 GO:0005515
Lapu6g01762 616 MobiDBLite consensus disorder prediction 590 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01762 Lapu-Chr6 17394103 17400555 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu6g01762 NPR1_like_C 9.8e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01762 K14508 - gmx:100217338 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01762 6 17394103 17400555 Lapu6g01762 6 17394103 17400555 ECH