Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01759 ATGCATTATAGTGTTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGCCAGCCTCAGAAATTATCAAAGTCTGATCTATCCATGATCAGAGAGAAACTGTTTTCTGATGATCCTGGGAGATTGCCCTTGGAGATGACTGCACATGACGGTGCAAAAAATATTTATAGTGCAGTACAGTTACCAGAAGAGACCTTTACTGTGGACATCACTGATGGAGAGGACGAAAAGATAATTTCATATAGTGTTACCTTAACTCTTGTTAATAAACTCAGGCTTTGCAAGTTAATGGACTATCTTAGTGGGCATAACCTCTCCATTCCTAGGGATATTTTACAAGGGCTGGATGTGGTGGTGAAAGAGAATCCTGCTAGACGCACTGTTTCTGTAGGAGGACGCTACTATCCCACAAATCCTCCTGTAGTAATGAAGGATCTTCACCATGGGATAATTGCTGTTGGGGGCTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTTTGGCTTTTCGAAAGGGAATGCCTGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAGTTAGATGAATTCGAAAAATTCAGGAAATGTGTTGAGAATGCACTTATTGGATTGAAAGTCAACGTAACTCATCGTAAATGCAATCGTAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCACTTTTCCTATTGACAATACAGGTGGATGGAATCGCCCAAAGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTCTAGATATAGGGAAAGACAAGAAGAACTATGTACCCATGGAATTTTGTGTTCTGGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGATAGTATATCTGCAAATACATTGAAAACAATGTCACTAGCTCACCCAAATGAGAGGGAGTGCGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGCGGTGGTTTTACTCAAAATTTTGGAATGAGTGTCAACACAACTATGACAACTATTGTAGGACGTGTACTTGGCCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAAAAATCATCAAATTAACCGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAAATCGATGGTGGAAGGTAAACCAGTTGAGCATTGGGGCATTCTTGATTTCACTAGTTTTGGGCCATTTAAGTACAAACTAAGAGGCAGGGATTTCATTCAAAAGCTTATAGGCAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGTGTTATGATTTGCTATCTGAATTACTTGAGAAAATTAACAACATTTGTAAATATAACCAAACACACCTGCAATTTCTTCTGTGTGTAATGGCTAAAAAAAGTCCTGGTTATAAGTACCTGAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAATGGTGCTAATGAAGCAGAAGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTCCCTTACTTTGTGGGAGAAGGACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCCGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTTGCTACTGTTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTGTGTGCCCACAATACAATCGAAGTGAGAAAATATTGAGCTTTGGAGATGTTTGCCTTGAGCTTGTTTCATGCTACAGGAGGATGAATGGAGTTAGGCCTGAAAGAATTGTTATTTTTCGCGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTCAACGAAGAATTGCTTGATTTGAAGAGAGTATTTCAAAGAATAAACTACTTTCCAACAATCACTCTTATTGTTGCACAAAAACGACATCAAACTCGATTTTTTCCGGAGGGCTGGAGGGATGGATCTTCTAGTGGCAATATTTTACCAGGAACAGTTGTGGACGCAAAAGTTATACACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGAACAAGCAAGCCTACCCATTACCATGTTCTTTGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAACTCATATACGAGATGTGCTTCACCTTTGCGAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTATGCTGACCTTGCTGCGTATAGAGGACGATTATACCATGAAGCAAGGATTGGGACGCAATCTCCAAAGTCAGCAAAAGATGCTTCGTCACTTTCACGAACCACTTCATTTGAACAGAGATTTTACACGCTGCATTCTGACCTGGAAAACATAATGTTCTTTATCTAA 2463 0.3991 MHYSVGVKPKVSSKFGQPQKLSKSDLSMIREKLFSDDPGRLPLEMTAHDGAKNIYSAVQLPEETFTVDITDGEDEKIISYSVTLTLVNKLRLCKLMDYLSGHNLSIPRDILQGLDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKLDEFEKFRKCVENALIGLKVNVTHRKCNRKYIISRLTPMITRYVTFPIDNTGGWNRPKDVSLLTFFKDKYGKEIMYKDIPCLDIGKDKKNYVPMEFCVLVEGQRYPKERLDSISANTLKTMSLAHPNERECAIHKMVQSSDGPCSGGFTQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGKIIKLTVDLEKCHWNLAGKSMVEGKPVEHWGILDFTSFGPFKYKLRGRDFIQKLIGKYKKLGIYMQEPIWYEESSMKILACYDLLSELLEKINNICKYNQTHLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEGHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILSFGDVCLELVSCYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRVFQRINYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDAKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGTQSPKSAKDASSLSRTTSFEQRFYTLHSDLENIMFFI* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01759 820 Pfam PAZ domain 185 311 IPR003100 GO:0005515
Lapu6g01759 820 Pfam N-terminal domain of argonaute 2 118 IPR032474 -
Lapu6g01759 820 SMART Piwi_a_2 480 778 IPR003165 GO:0003676
Lapu6g01759 820 Pfam Argonaute linker 1 domain 131 179 IPR014811 -
Lapu6g01759 820 CDD PAZ_argonaute_like 181 295 - -
Lapu6g01759 820 ProSiteProfiles Piwi domain profile. 480 779 IPR003165 GO:0003676
Lapu6g01759 820 Pfam Piwi domain 481 775 IPR003165 GO:0003676
Lapu6g01759 820 SUPERFAMILY PAZ domain 176 334 IPR036085 GO:0005515
Lapu6g01759 820 ProSiteProfiles PAZ domain profile. 181 296 IPR003100 GO:0005515
Lapu6g01759 820 Gene3D - 547 820 IPR036397 GO:0003676
Lapu6g01759 820 SUPERFAMILY Ribonuclease H-like 472 779 IPR012337 -
Lapu6g01759 820 Gene3D paz domain 175 300 - -
Lapu6g01759 820 Gene3D - 362 542 - -
Lapu6g01759 820 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 780 - -
Lapu6g01759 820 SMART DUF1785_2 127 180 IPR014811 -
Lapu6g01759 820 CDD Piwi_ago-like 343 777 IPR045246 -
Lapu6g01759 820 SMART PAZ_2_a_3 181 313 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01759 Lapu-Chr6 17364658 17369710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01759 2 779 Eukaryotic Initiation Factors Gene Family AT1G48410 37.015 2.62e-146 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01759 K11593 - gmx:100783571 1523.84