Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01757 ATGGGGGATCGGGGTGTTTTGGGTGTTAATGTTGGGAGAGAGGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGACGAGGAAGCGTGGAAAGAGACTGAGGAGGCTGTGGTGGAAGGGTTGAAGGACGAGCTTGATGAATTTTCGGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGATTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTCATGGAAAGGTCACCTGGGCTTCCTGCTATCAGGGTGCAGAAAAAACTTGACTTTTTTGCGGAGGAGCCTGTGGTTGACTACTTGGCACTCTTGGATGGCTTGCTGGAAGCTGTGCAGAAAAAGATCCGCAGGGTTTATGCTTTCACAGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAAATGGACATGCCTCTTTTGATGGCATTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTGTACCCTCTTCTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTGGCTATTGGACTTGTCACTTTCCCCGTAAATGGTGAGAGATTGCTTAAGAACTGTTCTATTTGTTGTGATGACAAGCCAGTGGCAATTATGATTACCCTGAAATGTTCACACACATTCTGTTCACATTGCCTGCGGGCCTATGCTGATGGTAAAGTACAATCTTCTCAAGTTCCTATAAGATGCCCTCAACCAGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCATTTGAATCACTGGAGAAAGCCCTTTCCGAAGCAAATGTAGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGTTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCTAGGGCAAGTTCTTCTAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGCGTAGAATTCCAGAATCTGCCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCGCCGTCTTGCACAAAATAAAAGATGGAAGCGTTGTCAGCAATGTCGTACAATGATTGAACTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCGTATTGGGATGAAGATAACTCAGAAGACTCAGTGACACACTCTCTCCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATTGTGGATGCATACTCAGACCAAGAACGATCGCAGCTTGCGCTTATTCAGAGGTTTCTAGCCGGGGGTTTCAGTCTCAGTGACAACAATCCTTACCAGTCTCCTCCTCACTGTACAGATTCCTATGTTGACCCTCTGAAGGATCTACATCAACTTCCATGGCTGGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACACTCAATGA 1545 0.4434 MGDRGVLGVNVGREEEEDEFCSCCGDEDEEAWKETEEAVVEGLKDELDEFSVKMFFKGLSMAGIENSSSGFSGIGVVMERSPGLPAIRVQKKLDFFAEEPVVDYLALLDGLLEAVQKKIRRVYAFTDSELLHDQITFGKKMDMPLLMALRERILELANNFEDFVLKLVPSSDLEQPLHLAKVAIGLVTFPVNGERLLKNCSICCDDKPVAIMITLKCSHTFCSHCLRAYADGKVQSSQVPIRCPQPGCKYCISATECRSFLPFTSFESLEKALSEANVDHSDRIYCPFPNCSVLLDPHECSSARASSSSQSDNSCIECPVCKRFICVDCKVPWHSSMSCVEFQNLPEEERDASDITLRRLAQNKRWKRCQQCRTMIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAYWDEDNSEDSVTHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDNNPYQSPPHCTDSYVDPLKDLHQLPWLERFVSVISDNYYEDYTQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01757 514 SMART ring_2 369 410 IPR001841 -
Lapu6g01757 514 SMART ring_2 200 251 IPR001841 -
Lapu6g01757 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Lapu6g01757 514 Coils Coil 33 53 - -
Lapu6g01757 514 CDD Rcat_RBR_unk 365 401 - -
Lapu6g01757 514 FunFam RBR-type E3 ubiquitin transferase 337 462 - -
Lapu6g01757 514 Gene3D - 54 186 IPR036397 GO:0003676
Lapu6g01757 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 126 460 IPR031127 GO:0004842|GO:0016567
Lapu6g01757 514 SUPERFAMILY RING/U-box 199 276 - -
Lapu6g01757 514 CDD BRcat_RBR_unk 281 342 - -
Lapu6g01757 514 FunFam RBR-type E3 ubiquitin transferase 52 187 - -
Lapu6g01757 514 Gene3D - 337 460 - -
Lapu6g01757 514 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Lapu6g01757 514 SMART ibrneu5 349 408 IPR002867 GO:0008270
Lapu6g01757 514 SMART ibrneu5 267 339 IPR002867 GO:0008270
Lapu6g01757 514 FunFam RBR-type E3 ubiquitin transferase 196 280 - -
Lapu6g01757 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Lapu6g01757 514 SUPERFAMILY RING/U-box 352 416 - -
Lapu6g01757 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Lapu6g01757 514 Pfam IBR domain, a half RING-finger domain 357 408 IPR002867 GO:0008270
Lapu6g01757 514 Pfam IBR domain, a half RING-finger domain 272 339 IPR002867 GO:0008270
Lapu6g01757 514 Pfam Reverse transcriptase-like 66 169 IPR002156 GO:0003676|GO:0004523
Lapu6g01757 514 SUPERFAMILY Ribonuclease H-like 68 170 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01757 51 399 C3H Transcription Factor Family AT2G19610 26.184 6.95e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01757 - - gmx:100783040 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01757 6 17344864 17349637 Lapu6g01757 6 17344864 17349637 ECH