LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu6g01743	ATGGATGAATGGGATAACACGCCACCTAATTGGGTGGGTTCAGATCCTTGTGGCGGTTGGGATGGCATTGAGTGTACAAATTCACGCATTACCTCCATATCATTAGCAAGCATGGATTTGTCTGGTCAGCTTACTTCAGATATTGGATTTCTCTCTGAACTCGTGATCTTGGATCTATCTTACAATAAGAATTTAACTGGACCACTTCCCAGTAACATTGGAAACTTGAGAAAGCTCAGAAACTTACTCCTTATTAGTTGTGGTTTCACTGGTCCTATCCCAGATACAATTGGAAACCTAGAACGGCTTGTCTTCCTATCTTTAAATTCCAATGGATTCACAGGGCCAATTCCAGCTGCCATTGGTAATCTCTCAAATGTGTATTGGCTAGACTTAGCTGAAAACCAGCTTGAAGGGCCCATCCCCATATCCAATGGAACTACTCCTGGTCTTGATATGATGCACCATACAAAGCACTTTCATTTTGGGAGGAATAAGCTTTCAGGAAACATACCTGCTCAACTTTTTAGCTCAGAAATGTCTCTCATTCATGTGCTTTTTGAAACCAACCGATTTACTGGAAGCATTCCATCTACAGTTGGCCTTGTCAAGTCTCTGGAGGTGGTCCGTTTTGATAGTAACTTTTTAAGTGGCTCTTTGCCTCAGAACATCACCAATCTTACAAGTGTTAGGGAACTGTTCCTGTCCAACAATCGCCTGTCTGGCTCCCTCCCAAACCTTACCGGAATGAATTCCCTCAGTTACCTAGATATGAGCAATAATAGTTTTGATCCATCAGACTTTCCACCATGGTTGTCAACTCTTCCAGCTCTGACAACAATAATGATGGAGAATACAAAACTTCAAGGGGCTATTCCTGTTTCTTTGTTCAACCTGCAACAGTTGCAGACAGTGGTGCTGAAAAGCAACCAGCTAAATGGAACTTTAGATATTGGCACATCCATCAGCAACCAACTGAACCTCCTCGATTTGCAGACTAATTTAATTGAAGAGTTTAAACCACAAATCGATGTATCTAAAGTGGAGATAATACTTTTGAATAATCCAATTTGCCAAGAGACTGGAGATCCACAGACTTATTGTTCCATAACAAATTCTAACGACTCATATTCAACGCCACCAGAAAACTGTGTACCTGTTCCCTGCAGCTTTGATCAGACATTAAGCCCGAAATGCAAATGTGCATACCCATATACAGGAACTTTATTTCTCAGAGCTCCTTCATTCTCAGACTTGGAAAACAAGACTGTCTTTGTAACCCTGCAGTTATCTCTGATGCAGTCTTTTCAACTTAATGATAAACCTGTGGATTCAATTTCTTTAAGCAATCCAAGGAAGAACATATATCAGTACCTTGAATTGACTTTAAAATTATTTCCTTCTGGCCAAGATCGTTTCAATCGAACAGGGATTTCCAGTATAGCCTTTCTTCTCAGCAACCAAACATACAAGCCTCCTTCTATGTTTGGACCATATTATTTTATTGCTGATGACTATGAAAACTATATGAATGACACAGTATTAGAAGGTCCTGTGACAACGTCCAGTAAATCTTCAAATACTGGCATCATAGCTGGAGCTGCAGCTGGTGGTGCTGCCTTGTTGGTTATGGTACTTGTTCTATTTGTGTATGCTCTCCACCGGAAGAATAAGTCAGTAAGAGCAACCGGGAAAAACAATCCATTTGAACAATGGGATCCGGATGAGAGCAATAGTAGCATCCCACAGTTGAAAGGAGCAAGGCGCTTCAGTTTTGAAGAGATACAGAACTGCACCAAAAACTTCTCACAAGTCAATAATATAGGATCTGGTGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAACGGGCAACTAATTGCAGTCAAGCGAGCTCAGAAGGAATCTATGCAGGGAGGGTTGGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTATTGGTTTCTGCTTTGAGCAAGGGGAACAAATGCTGATTTATGAGTACGTTGCAAATGGTACTTTGAAGGACACCCTTTCAGGGAAATCTGGAATTAGATTAGACTGGATTAGAAGGCTGAAAATAGCCCTTGGTGCTGCCAGGGGTCTGGACTATCTGCATGAACTTGCGAATCCTCCTATCATACACAGGGACATCAAATCCACTAACATCTTACTAGATGAACGCTTGAATGCTAAAGTATCTGATTTTGGTCTCTCCAAACCTTTAGGTGATGGTGCAAAAGGTTATATCACAACACAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGCTGATAAGTGCAAGAAGGCCAATAGAGCGAGGGAAGTATATTGTGAAAGTGGTCAAGGGTGCTATAGACAAGACAAAAGGCTTCTGTGGTCTTGAGGAAATTCTTGATCCAACCATCGAATTGGGGACAGCACTGAGTGGTTTTGAGAAGTTTGTGGATCTCGCCTTGCAGTGTGTTGAAGAGTCAAGTTCTGACAGGCCTACAATGAATCATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCTGGTTCAAGCCCCATTTTATCAGCATCAGCGTCCACTTCATCTAGTTATAATAATCCAACTAAGGGGAGTTCCCTCCATCCTTACGACAATGAATACTTTGATTCAAGTGTGGTCCTTCCACGTCCATAA	2763	0.4151	MDEWDNTPPNWVGSDPCGGWDGIECTNSRITSISLASMDLSGQLTSDIGFLSELVILDLSYNKNLTGPLPSNIGNLRKLRNLLLISCGFTGPIPDTIGNLERLVFLSLNSNGFTGPIPAAIGNLSNVYWLDLAENQLEGPIPISNGTTPGLDMMHHTKHFHFGRNKLSGNIPAQLFSSEMSLIHVLFETNRFTGSIPSTVGLVKSLEVVRFDSNFLSGSLPQNITNLTSVRELFLSNNRLSGSLPNLTGMNSLSYLDMSNNSFDPSDFPPWLSTLPALTTIMMENTKLQGAIPVSLFNLQQLQTVVLKSNQLNGTLDIGTSISNQLNLLDLQTNLIEEFKPQIDVSKVEIILLNNPICQETGDPQTYCSITNSNDSYSTPPENCVPVPCSFDQTLSPKCKCAYPYTGTLFLRAPSFSDLENKTVFVTLQLSLMQSFQLNDKPVDSISLSNPRKNIYQYLELTLKLFPSGQDRFNRTGISSIAFLLSNQTYKPPSMFGPYYFIADDYENYMNDTVLEGPVTTSSKSSNTGIIAGAAAGGAALLVMVLVLFVYALHRKNKSVRATGKNNPFEQWDPDESNSSIPQLKGARRFSFEEIQNCTKNFSQVNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQMLIYEYVANGTLKDTLSGKSGIRLDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELISARRPIERGKYIVKVVKGAIDKTKGFCGLEEILDPTIELGTALSGFEKFVDLALQCVEESSSDRPTMNHVVKEIENMLQLAGSSPILSASASTSSSYNNPTKGSSLHPYDNEYFDSSVVLPRP*	921

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu6g01743	920	ProSitePatterns	Protein kinases ATP-binding region signature.	608	630	IPR017441	GO:0005524
	Lapu6g01743	920	SUPERFAMILY	L domain-like	24	360	-	-
	Lapu6g01743	920	Gene3D	Ribonuclease Inhibitor	246	385	IPR032675	-
	Lapu6g01743	920	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	722	734	IPR008271	GO:0004672\|GO:0006468
	Lapu6g01743	920	Gene3D	Phosphorylase Kinase; domain 1	573	677	-	-
	Lapu6g01743	920	Gene3D	Ribonuclease Inhibitor	1	145	IPR032675	-
	Lapu6g01743	920	Gene3D	Ribonuclease Inhibitor	146	245	IPR032675	-
	Lapu6g01743	920	FunFam	Leucine-rich repeat protein kinase family protein	567	677	-	-
	Lapu6g01743	920	ProSiteProfiles	Protein kinase domain profile.	602	875	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01743	920	Gene3D	Transferase(Phosphotransferase) domain 1	678	883	-	-
	Lapu6g01743	920	Pfam	Protein kinase domain	603	869	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01743	920	SUPERFAMILY	Protein kinase-like (PK-like)	588	897	IPR011009	-
	Lapu6g01743	920	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	678	887	-	-
	Lapu6g01743	920	FunFam	Leucine-rich repeat protein kinase family protein	147	246	-	-
	Lapu6g01743	920	CDD	STKc_IRAK	608	874	-	-
	Lapu6g01743	920	SMART	serkin_6	602	877	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01743	920	FunFam	Leucine-rich repeat family protein	1	146	-	-
	Lapu6g01743	920	PANTHER	RECEPTOR-LIKE PROTEIN 55	7	874	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu6g01743	Lapu-Chr6	17216975	17239232	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu6g01743	3	918	Receptor kinase-like Gene Family	AT5G49760	57.609	0.0	1018

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Lapu6g01743		Pkinase	5.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu6g01743	-		-	gmx:100780344	1597.02