Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01729 ATGTCTCAATATCATGGTGATGAAATGGAGTATGCGGCAGATGATAATGAAATGGCAGAGGTAGAAGATGATATGTATTTTCGCCGCAGAGCATTTGGTGAATCAGATTCAGATGATGACGACGACTATGAATATGACCCTTTGGAAAACCGAATAACAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGACCATTAGTCGCGAGAAATATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACCACAATCTGGGGAAATGTCAGAGAAGGAATGCAAAGCAACAGATAAAGGGGGAAATTATTATGATTTCTGGCAAAACACTAGATCTGTTAAGTCAACAATACTTCACTTCCAATTGAGGAATTTGGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCAAATTACTCAATTGTTCACTGGTCCTCATTAAGTTCTAAAAGGTCTGAAGTCTTGAATGTATCAGGCCATGTAGCTCCCTGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACTCAGACTCAAATTAGTACACTGGCAGTACGGGATAATTTGTTGATTGCAGGAGGGTTTCAAGGAGAACTTATTTGCAAGTACTTAGACCGGCCTGGAGTTAGTTTTTGTACCCGAACCACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGACCACCCAAGTGGAGCTGTTCATTTCATGGCGTCAAACAATGACTCTGGAGTTAGAGACTTTGACATGGAGAGGTTTCAGCTTTCAAAGCATTTCTCCTTTCCTTGGCCAGTAAATCATACTTCATTAAGCCCTGATGGGAAACTACTTGCCATTGTTGGAGACAACCCAGAAGCACTACTGGTGGATTCTCAAACAGGAAAGACTATCACACCTTTGCATGGACACTTGGATTACTCATTTGCATCGGCATGGCATCCTAATGGGCACATATTTGCTACTGGGAACCAAGATAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAATCTGTTGCTGTTCTTAAAGGAAACCTTGGAGCTATTCGTTCAATACGATTCACATCTGATGGACAGTTCATGGCAATGGCAGAGCCAGCTGACTTTGTGCATGTCTATGACTCAAAGCATGGGTTTGAAAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTATCCTTTAGCCCTGACACAGAATCACTTTTTATAGGTGTTTGGGACCGCACCTATGGAAGCCTTCTACAGCTGAATCGACGCAGAAATTACATGAATTTGAGTTTGGTGGTACCATCTTAG 1350 0.4156 MSQYHGDEMEYAADDNEMAEVEDDMYFRRRAFGESDSDDDDDYEYDPLENRITDTTAAEARRGKDIQGIPWDRLTISREKYRQTRLEQYKNYENIPQSGEMSEKECKATDKGGNYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIVHWSSLSSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYDHPSGAVHFMASNNDSGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLAIVGDNPEALLVDSQTGKTITPLHGHLDYSFASAWHPNGHIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMAMAEPADFVHVYDSKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMNLSLVVPS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01729 449 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 441 - -
Lapu6g01729 449 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Lapu6g01729 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
Lapu6g01729 449 SMART WD40_4 308 347 IPR001680 GO:0005515
Lapu6g01729 449 SMART WD40_4 267 305 IPR001680 GO:0005515
Lapu6g01729 449 SMART WD40_4 351 390 IPR001680 GO:0005515
Lapu6g01729 449 FunFam WD-40 repeat family protein 228 444 - -
Lapu6g01729 449 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 189 427 IPR011047 -
Lapu6g01729 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Lapu6g01729 449 Gene3D - 233 445 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01729 Lapu-Chr6 17127479 17132901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01729 303 427 Miscellaneous Gene Families AT5G08390 28.000 3.58e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01729 - - gmx:100791929 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01729 6 17127479 17132901 Lapu6g01729 6 17127479 17132901 ECH