Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01725 ATGTACCCGAGACTCATACACCCCCATGATGGGATTGTGGCGCAGGATGACATGCAGGCTGCTGCCTCCAACCTCTCTCACTCTCACAAGGGAGACCCTTGTCTCGTTCTCACTGCTGATCCCAAACCTCGCCTTCGTTGGACTCAGGACTTGCACGAACGCTTCGTTGATGCCGTCACACAGCTTGGGGGAGCAAGTAAAGCAACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGTGAAGTATGCAAAGATGGTTCATATCTTTTAGACAGCCCTGGCACTGAGAACACTTCTCCAAAGTTGCCAACTTCCGACACAAACGAGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAGAGTAAATTACATTTGCAAGTGGAGGCAGAGAAGCATTTGAAGATTCGCCAGGATGCAGAGAGGAGATACATGGCCATGCTTGAAAGGGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACAGTTATAGACACTGACAGCCAAAAGTTTCAAGCAATTGGAAGCAAAACACCTAGAGGTACTTTAGTTGATCCTCTTGGATTTTATTCCTTGCCATCAGCTGAGGTGGCTGGAGTGAATGTTCCGGATGAAGAAATACCACCGAGTCTCCCATCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAAAGTTCTGGGGGATTGACTTTAGAAGGATCTCCAGGTGGGGGGAAAAGAAGGATGCTGGGCATGAACTCTATGGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAGGCCATCAATGTGGTCCAAGGTAATCATCCTCAAGGAATAACTAGGTATGGCCATGGTGAGAGTCCTGTTTTTTCTTCTCCAACATTATGGGCGGGTTTAAACTATACCAACAGTGGGCCTTTTCCATGA 1014 0.4675 MYPRLIHPHDGIVAQDDMQAAASNLSHSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEVCKDGSYLLDSPGTENTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLKIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQAIGSKTPRGTLVDPLGFYSLPSAEVAGVNVPDEEIPPSLPSQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMNSMAAPLIWSEAKMRTQAINVVQGNHPQGITRYGHGESPVFSSPTLWAGLNYTNSGPFP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01725 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Lapu6g01725 337 FunFam Myb family transcription factor 41 99 - -
Lapu6g01725 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 263 IPR044848 GO:0003700
Lapu6g01725 337 MobiDBLite consensus disorder prediction 251 273 - -
Lapu6g01725 337 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Lapu6g01725 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Lapu6g01725 337 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Lapu6g01725 337 Gene3D - 41 99 - -
Lapu6g01725 337 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01725 Lapu-Chr6 17073416 17102700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01725 31 255 G2-like Transcription Factor Family AT3G24120 46.639 4.98e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu6g01725 Myb_DNA-binding 6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01725 - - gmx:100786397 577.785