Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01713 ATGGAAGAAAAGATAGATACTGCAGACAAGAAGGTGCTGGTTGACATTGTAAAATTGGTACAAAAAAGAGGCCTGAAGGGTAAGCTTGGAGGCTGGAAAGAATTCTTGGACAGTCATGACAAAAGGTTTGGGGCCAATTTGAGTGATCCATCAAAGCGATCCCATGAGATATTGGCTGCATTTCTAAAGACATTTTCGGAGGAGGAAGATTTGAAGTTTTTTGATAACGTCATGCGACATCATGCTAATCAATACACGTTGGAGCGACTGAAAGATAAATCCCTTGAGTCGCCAGAGCAGAGGCTAGTTCAAATAACTCTGCAGCATCCATTATATCCACTGGACTATTCATTTCCATCAATTGATGAGGGGTGGATAGTTGTAAATGTTAAAACCAAACCCAAGGTGATGAAGTCTACTAAAATGCTTGCTGTTGATTGTGAAATGGTTCTTTGTGAAGACGGGACAGAAGCAGTCGTTAGAGTCTGTGTGGTAGACCATAATTTAGAGGTCAAACTACATGAATTTGTGAAACCCAACAAAAAAATTGTGGACTACAGAACAGATATCACTGGTGTCTCTTCTCAAGATCTAGAGTCAGTGACTTGCTCCTTGGCTGATATACAGAAATCCATGAAGAAGTTGTTATCAAATGGAACCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCACGTCAGAGTGATTGACACTGCCTATATCTTCCAATCCTTGGATGGATCTACGCACAGAAGACCTTCTTTGAATGGTTTATGTCAGGCTGTGTTGGGTTCTGGTGTACGGGAAAAAGGTGCTGCACATAATTGTCTAGATGATGCGTGTGCAGCTATGAATCTCGTCCTTGCGAAGATCAAACATGGTGTTGATAAGGAATTCCCAATTTCATTGGTTCAAGAGCATGTTCCAGAAGTTCCAGAAAGTGAGATGGCAAAGCTGTTTCTTCACAAGATACCAAACACTGTAAACACTGAAGCACTGCATAAAATTGTTCCTGGAGAATTCAAAACAGAATTAAAGCCTTCCAGGAAAGGTCAAGGAAGACATTATTCTGCCTTGGCTGTTTTTGAAAATCCACAAGAGGCTGATGATGCCTATGAAAATGTCCAAGGAATCGAATTAAAGGATACATATGGGCGTCCGCAGAAACTTGTAACATTTCTGCTTAGTACAGGCATGCCTGTTACTTTATATGTTCGGAAAATGGTAAGTAATGAACCCAATGACCAGACTCAATCTAATAAGAGGGCTTTACAAACGGAGGAGGCTGTTGATGTTTCCAAGAAAGCAAAGATAGATAAAATTGAAGAGGATGCACCAAGCGGTGACACCCATTCAAATGAGATTGAAGCACTGAATCAGCGACTAAAGCAAAGTGAATTGGAGGTCGAATCATTGAGGAATCAGCTGACACAGAAAGATTTTGAAATATCCACGCTGCATAAAATGATAGCCTCTTTAAGTAAGCGGAAAAAGTTAAAAGTGTAG 1524 0.4049 MEEKIDTADKKVLVDIVKLVQKRGLKGKLGGWKEFLDSHDKRFGANLSDPSKRSHEILAAFLKTFSEEEDLKFFDNVMRHHANQYTLERLKDKSLESPEQRLVQITLQHPLYPLDYSFPSIDEGWIVVNVKTKPKVMKSTKMLAVDCEMVLCEDGTEAVVRVCVVDHNLEVKLHEFVKPNKKIVDYRTDITGVSSQDLESVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDHVRVIDTAYIFQSLDGSTHRRPSLNGLCQAVLGSGVREKGAAHNCLDDACAAMNLVLAKIKHGVDKEFPISLVQEHVPEVPESEMAKLFLHKIPNTVNTEALHKIVPGEFKTELKPSRKGQGRHYSALAVFENPQEADDAYENVQGIELKDTYGRPQKLVTFLLSTGMPVTLYVRKMVSNEPNDQTQSNKRALQTEEAVDVSKKAKIDKIEEDAPSGDTHSNEIEALNQRLKQSELEVESLRNQLTQKDFEISTLHKMIASLSKRKKLKV* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01713 507 Coils Coil 454 488 - -
Lapu6g01713 507 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Lapu6g01713 507 CDD REX1_like 143 294 IPR034922 -
Lapu6g01713 507 SMART exoiiiendus 141 302 IPR013520 -
Lapu6g01713 507 Pfam Exonuclease 144 292 IPR013520 -
Lapu6g01713 507 Gene3D - 137 311 IPR036397 GO:0003676
Lapu6g01713 507 FunFam Small RNA degrading nuclease 3 137 311 - -
Lapu6g01713 507 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 309 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01713 Lapu-Chr6 16978218 16986658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01713 138 273 C2H2 Transcription Factor Family AT3G27970 31.373 1.92e-11 63.5