Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01678 ATGACGTCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATATTACTTATGAGGGTGATTCTGAAGAGGGTTCTACGGCCCCTGAATTGGTGAAGGAAGAGAAAGCATCTTCTGGGGCTATGATTACTCCCTATGTTGGAATGGTTTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGATCTAGAATTAGCCCCCAGTTGGGGATTTACAAGCGAGACTTCGTTTGTTACCGGTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCGGTGAGATGTGGATGTGATGCAAAGATGTATCTATCCAAGGAGGTTATAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCAGCATATCGTAAAATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTTGAGCAGGAAAAGGGGATTCAAGGCGGCCAGCTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGCAAGAAGGTTGTTCTAGAGAACGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTATCGGAACTTCTTGAGGCGTGCAAAGTGATGAAAGAAGCAGATGATGAGTTTGTGTATGATTTTACTCTGGATGGGAATGATAAGGTTGAAAATGTAGCGTGGTCATATGGCGACTCAGTTAATGCAAATGCTATGTTTGGTGATGTGGTTTATTTTGACACTTCTTATAGATCGGTCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAGCTATGGTAGAACTATTTTTTATGGTTGTGTTTTATTGCAGGATGAAACACCTCAATCCTTCTCATGGGCATTACAGACTTTTCTCAGGTTCATGAGAGGAAGATGTCCACAAACTATTCTAACTGATCTAGACCCGGGACTTAGGGATGCGATTATAAGTGAATTTCCAGGAACTAAACATGTCGTTCCACAGTGGAATATTCTACACAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATGCAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATGCAGAGGAATTTGAACTTCAGTGGAGCCACATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATACTGATTTACTATATTCTGTTCGAGCATCCTGGGCACAAGCCTATGTGAGAGGTTACTTTCTGGCTCAAATGGCGACAATAGCTTACGCAAAGTCTATAGATGCATTTTTGAAAGGGATTTTCTCTGCTCATACCTGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAAAATCAAGCACTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCACGGAGTATTCTCACTCCTTTTGCTTTTAATGCCTTGCAGCAAGAGCTGTTGCTGGCAATGCAATATGCTGCATCCGAAATGGCCAATGGATCCTATATTGTTCGGCATTTCAAAAGGATGAACGGAGAACGGCTTGTAATATGGTTGGTGGAAGATGATCAGATACATTGCTCTTGCAAGGAATTTGAATCCTCGGGAATACTATGCAGGCATGCTCTTCGTGTATTTGTAATAAAGAACTACTTTCAGTTACCTGATAAATACTTTTTAGGTAGATGGAGACGGGAATGCTCATTACTTGTTGATGATGATGATAACAATCAAGGTATTGGAGGGGAATGGTTTCAAGAATACCAGTCCCTAGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACAAAAGAACTTACTAGGATTCTTAACGAGGTTAGAAATCTCCCTGAGGCTGACGGAGTCTGCATGAACATGTCAGTTTCACCAGCCAACTAG 2076 0.4133 MTSIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGSTAPELVKEEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVIEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVSELLEACKVMKEADDEFVYDFTLDGNDKVENVAWSYGDSVNANAMFGDVVYFDTSYRSVTYGLLFGVWFGIDSYGRTIFYGCVLLQDETPQSFSWALQTFLRFMRGRCPQTILTDLDPGLRDAIISEFPGTKHVVPQWNILHKVPCWFSPTLGSRYAEFKSEFDALFHIENAEEFELQWSHMISVFGLGSDKHTDLLYSVRASWAQAYVRGYFLAQMATIAYAKSIDAFLKGIFSAHTCLRSFFEQVGISASFQNQALKETQYIQLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLGRWRRECSLLVDDDDNNQGIGGEWFQEYQSLAETLFQESSITKERSDYVRKELTKELTRILNEVRNLPEADGVCMNMSVSPAN* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01678 691 Pfam MULE transposase domain 291 384 IPR018289 -
Lapu6g01678 691 SMART 26again6 573 600 IPR006564 GO:0008270
Lapu6g01678 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Lapu6g01678 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Lapu6g01678 691 Pfam SWIM zinc finger 569 594 IPR007527 GO:0008270
Lapu6g01678 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 657 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01678 Lapu-Chr6 16628419 16630690 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu6g01678 MULE 2.7e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01678 - - gmx:100817107 1324.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01678 6 16628419 16630690 Lapu6g01678 6 16628419 16630690 ECH