Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01667 ATGGTTTCGCTGGAGGAATCACGGTCGAATTCCAGTCGCTTCCCCTTGGCCAGGACTTACCAGTACCACTCCTCGGTTTCGTCAAAATCGCACCGCCACATCGGAAGGTCCATGCGCACTATACGCTCCAATTTCTTCCAAGATGATAACAGCAGCTGTTCCTTCACCGAGAAATCCACCTGTCTATCGGAGAACCTCACCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTCGCGGAACAACAAATCGCTGAAATCCTCACTCGCTGAGGAGGACTTTCTCGACCTCTCCCAGGCCTTCAGCGACTTCTCTGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTCGCCACTCTCCCATCACCGGAATGCGTGCAGAAGAGCGATATATCCGGAGAGGTGGAGCCGGAGCCGGAGCCGGAACCCTGCACGGGTTTCCTGCAGAGGGAGAGCTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATGTGCATCGACGGCCTCCAGTCGCACTCGGTGGCGGTGAAGCGCTCCGCGGCGGCGAAACTTCGCCTGCTAGCGAAGAACCGTGCCGACAACCGCGTTCTGATCGCAGAGTCCGGCGCGGTTCCGGTTCTCGTTCCGCTTCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCAGTCACGGCGCTCTTAAATCTATCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCCGGGGCAGTGAAGTCGCTGATTTATGTGCTGAAGACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTAAGCCTGGCGTTAGTGGAAGAGAACAAGAGTTCCATCGGGGCTTCTGGAGCGATACCGCCCTTGGTTTCGCTTCTTCTGAACGGTTCGAACAGAGGGAAGAAGGACGCGCTGACGACACTTTACAAGCTATGTTCTGTTAGGCAGAATAAGGAGAGGGCGGTGAGCGCCGGTGCGGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAACGGCATGGCGGAGAAGGCCATGGTAGTGCTCAACAGCCTGGCGGGGATTCAGGAAGGGAAGGACGCGATTGTGGAAGAAGGTGGGATCGCTGCTCTTGTGGAAGCCATTGAGGATGGGTCTGTGAAGGGGAAGGAGTTTGCGGTTCTGACCCTTCTTCAGCTCTGTGTTGACAGTATCAGAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCCCTTTCTCAAACTGGGAGTGTTCGAGCTAAGCATAAGGCCGAAACGCTTCTTCGATATTTGAGGGAATCAAGACAAGAGGCGTCTACTTCGAGTTCTTAG 1374 0.5691 MVSLEESRSNSSRFPLARTYQYHSSVSSKSHRHIGRSMRTIRSNFFQDDNSSCSFTEKSTCLSENLTDSVVDLRLGELASRNNKSLKSSLAEEDFLDLSQAFSDFSACSSDISGELQRLATLPSPECVQKSDISGEVEPEPEPEPCTGFLQRESFSTEIIESISPEDLQPTVKMCIDGLQSHSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSIRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01667 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Lapu6g01667 457 PANTHER U BOX DOMAIN-CONTAINING 134 446 - -
Lapu6g01667 457 SMART arm_5 324 364 IPR000225 GO:0005515
Lapu6g01667 457 SMART arm_5 406 447 IPR000225 GO:0005515
Lapu6g01667 457 SMART arm_5 242 282 IPR000225 GO:0005515
Lapu6g01667 457 SMART arm_5 283 323 IPR000225 GO:0005515
Lapu6g01667 457 SMART arm_5 365 405 IPR000225 GO:0005515
Lapu6g01667 457 SMART arm_5 201 241 IPR000225 GO:0005515
Lapu6g01667 457 FunFam U-box domain-containing protein 4 311 452 - -
Lapu6g01667 457 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Lapu6g01667 457 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Lapu6g01667 457 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Lapu6g01667 457 FunFam U-box domain-containing protein 4 158 310 - -
Lapu6g01667 457 Gene3D - 153 312 IPR011989 -
Lapu6g01667 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Lapu6g01667 457 Gene3D - 313 457 IPR011989 -
Lapu6g01667 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01667 Lapu-Chr6 16515758 16519421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01667 109 450 U-box Gene Family AT2G23140 45.014 3.47e-84 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01667 - - gmx:100806768 775.393