Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01659 ATGTCTGGCGCAGAAGAAGGCTCCGCCAATTCGTTGCGGTGGCGGTTTCAGTTCTTCGTCCGCACGGTGTCGACGGGGCGCAGCATGGTGATGACCGGTTACCCGGAAGAGACGGTGAAATCGGTCCTTGTGAAGATCGCATGGGTGACGGGAATGCCGCTGAGAGAACTGAGACTGATATACAATGGCAAACAACTTCAATTGGAGAAGACTCTGGTAGAATGCGGCATCGAGAACGATTCCAATCTCAACGTAGTTGGTCATTTGCGCAGCGGATTGTATCCCGCGGCGTCACGCACTATGGACTACGTGCTCTCCTTGCTCGCGCACGTGTGTACCAGCAATACGCGGAGCGCATGCGAGGCCTTGAAGACCGTGAAGGCTCTCACCACGCGCCACTTCAGCCTCCCCGGTTTCGTGGAGGTTTTCGCGGTCTCTAATGCCCCCGCGATGCTGGCCTCGTTCTACCACTCGCCACGTGGCGCGGGTACCAGGCAACTTGCCGAGTCTTGCATCATCAATTTCCTGAGTTGTGCGCGCGCCAAGAATTGGCAGGGTATTTCCACTGGCGCGGTGATGGAGTTTTGCAAGCAGCTTAGAAAGTTCGGGCGTGGATGCCATGATCATTTGTACCTTTCCTGTAGAAACACTTTGGGGCTTTTGTTGAATACAATTGGGATTTCCTATGGTTCTGGGAGTGTGAAAAGGAGGGTTTCACTTCACGATGTTTTCTCCTTTGTTCCTGAGCTTGTGGATGCGCTGTTAGTGGGCTTGGATAACAGTAAACGGTGTGGTAATACCACCATGAGGCCTTCGTTGGGAGAGGTTTCGGATTTGACAATATTCTTGGCCCCTTTGAGGAATACAATTATTTTGCAGAAACAACTGTTGGTTGGTGGTGTTGTGAGTGGTGACGATGGAAAATGTAGTGTGGAGAAGGAGGATGATCAGTTGTTTGCGGAAGAAGTTGATTATCTTCGGCTTGTGTTTGTTCAGTTGTTGAGCAAAATGGATGAGTGTTTTCGCTGCATGTCGGAATGCTTGGCGGGCAAGGAATCTGGTGGGAGGGGTTTTGTTCTCTATCCCTCATGGTCTGAGTATCTTCGTATCTTGAAGGATTTGTATGATACTTCTAAGGTCTTTGATGGTGCGGACGAAATATTTTGGACAGTTTTGAGGTTTCATAAGAATATGCTGTCTGCGCTTGTTGTTGGGTTTGCGAGGAGAGGTGGTGATCATCGGTGGATTCTTGATAACAAGAGTGTGACCAATTTTGAGTGTAGGAGGCATTTGGCGATGATGCTGTTCCCTAATGTAAACGAAGACTTTGACTTGTTTCATGAGATGCTTATTGACAGGTCTCAGGTACTGGCGGAGTCTTTTGAGTACATAAGACGAGCGGAGCCGGAGTCTTTGCGTTCTGGTCTGTTTATAGAATTCAAAAATGAGGAAGCTACAGGACCGGGTGTGTTGCGGGAGTGGTTTGTTCTGGTGTGTCGTGGAGTATTTGATCCACGACATGCTCTTTTTGTGGCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGGCACCTTGAGTATTTTCGGTTTGCTGGTCGGGTCATTGCATTGGCTTTGTTGAGAAAGGTGCAAGTTGGTATTGTTTTTGATCGTGTATTTTTCTTGCAATTGGCTGGAATTCATGTTACCTTAGAAGATATACGGGATGCAGATCCTTACTTGTATAGAAGCTGCAAGCAAATATTGGAGATGGATGCCGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGTTGGAGGAATTAGGATGCAGGAAAGTTGTTGAACTTTGTCCTGGTGGGAAAAACCTCGTATTGAATAGCCAGAACAGGGAGCACTATGTTGATCTTCTTATACAGCATTGTTTTGTAACATCCATATCCGAGCAGGTATCAAATTTTGCCCAGGGTTTTGCTGATATTCTTTCCAGCTCAAAGCTTCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTCGATTGGATGCTGCATGGGAGTGAAAATACAATCTCTATTGAAGATTGGAAAGCACATACCATGTACAAGGGCTATAAAGAGTCTGATTGTCAGATATCTTGGTTTTGGAAGATTGTTGGGAGAATGTCAACGCAACAAAGGAGAGTTCTGATTTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGATTCCGTGGTTTGTCATCCCCTCTATTCATTTGCAGGACTGCGGAACCTAGCAATCGCCTGCCCTCCTCTCAAACATGTTTTTACCAGCTGTTTTTACCCCAGTATTCATCTATTACTGTCATGCAAAATCACTTTGGAATCATCACTCAGGAACACATTGCTTGCAGTTTTGGTATTAGTTAA 2424 0.462 MSGAEEGSANSLRWRFQFFVRTVSTGRSMVMTGYPEETVKSVLVKIAWVTGMPLRELRLIYNGKQLQLEKTLVECGIENDSNLNVVGHLRSGLYPAASRTMDYVLSLLAHVCTSNTRSACEALKTVKALTTRHFSLPGFVEVFAVSNAPAMLASFYHSPRGAGTRQLAESCIINFLSCARAKNWQGISTGAVMEFCKQLRKFGRGCHDHLYLSCRNTLGLLLNTIGISYGSGSVKRRVSLHDVFSFVPELVDALLVGLDNSKRCGNTTMRPSLGEVSDLTIFLAPLRNTIILQKQLLVGGVVSGDDGKCSVEKEDDQLFAEEVDYLRLVFVQLLSKMDECFRCMSECLAGKESGGRGFVLYPSWSEYLRILKDLYDTSKVFDGADEIFWTVLRFHKNMLSALVVGFARRGGDHRWILDNKSVTNFECRRHLAMMLFPNVNEDFDLFHEMLIDRSQVLAESFEYIRRAEPESLRSGLFIEFKNEEATGPGVLREWFVLVCRGVFDPRHALFVACPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLRKVQVGIVFDRVFFLQLAGIHVTLEDIRDADPYLYRSCKQILEMDADFIDSDALGLTFVRELEELGCRKVVELCPGGKNLVLNSQNREHYVDLLIQHCFVTSISEQVSNFAQGFADILSSSKLQQFFQCLELEDLDWMLHGSENTISIEDWKAHTMYKGYKESDCQISWFWKIVGRMSTQQRRVLIFFWTSVKYLPVEGFRGLSSPLFICRTAEPSNRLPSSQTCFYQLFLPQYSSITVMQNHFGIITQEHIACSFGIS* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01659 807 SMART hect_3 466 805 IPR000569 GO:0004842
Lapu6g01659 807 Gene3D Hect, E3 ligase catalytic domain 690 805 - -
Lapu6g01659 807 ProSiteProfiles HECT domain profile. 468 807 IPR000569 GO:0004842
Lapu6g01659 807 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 568 650 - -
Lapu6g01659 807 Pfam Ubiquitin family 19 90 IPR000626 GO:0005515
Lapu6g01659 807 Gene3D Hect, E3 ligase catalytic domain 568 650 - -
Lapu6g01659 807 FunFam E3 ubiquitin-protein ligase UPL5 691 806 - -
Lapu6g01659 807 SUPERFAMILY Ubiquitin-like 14 92 IPR029071 -
Lapu6g01659 807 SUPERFAMILY Hect, E3 ligase catalytic domain 445 790 IPR035983 GO:0004842
Lapu6g01659 807 CDD HECTc 447 788 IPR000569 GO:0004842
Lapu6g01659 807 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 17 805 - -
Lapu6g01659 807 Gene3D Hect, E3 ligase catalytic domains 450 682 - -
Lapu6g01659 807 Gene3D - 15 94 - -
Lapu6g01659 807 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Lapu6g01659 807 Pfam HECT-domain (ubiquitin-transferase) 497 798 IPR000569 GO:0004842
Lapu6g01659 807 SMART ubq_7 16 88 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01659 Lapu-Chr6 16434362 16438920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01659 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.364 2.50e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01659 - - gmx:100789233 911.368