Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01637 ATGAGTCAACTCAGCGTGGTCTTGCAGGAATCGCTACAGGGGGAGCCCAGGACCATTCTGGGGTTGTTGAGGGATCAGATGGACGGTGTACATGGAGGGGCCCGCAGGAGGAGGACCTTCAAGGAACGCTTCGGATTCATCGGCATGGGGTGTTGTGGGGCCACCTGGGGGTTCCGTTCTGACGCGTTAGGTTTCACCAACGGAGAACAGGAGCAGCAAACGGATCCGGGTCAAGGGTCGGGTCCGGAGTGTGTGGATCACGGTGCGTCGGGTTCGGGTATGAACCTGGCGGCGGCGCTTGCGGCTGAGCGTCAAATCCGGGGGCCGCAGGAGGAGGCGAGAGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGAGCGAAGGAGGGGCGGCGGAGAAGGAAAAGGAGGAGGAGAAGGGCGGTGTGGTGGGGAATGATTGGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCGTTCATCCCATGTGGTCACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTTAATCGAGGGTCTTGTCCCCTCTGCAATCGCTCCATCCTCGAGATTCTCGACATTTTCTAG 609 0.6076 MSQLSVVLQESLQGEPRTILGLLRDQMDGVHGGARRRRTFKERFGFIGMGCCGATWGFRSDALGFTNGEQEQQTDPGQGSGPECVDHGASGSGMNLAAALAAERQIRGPQEEARAPGTPWRVSLMRLLEESEGGAAEKEKEEEKGGVVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01637 202 PANTHER OS01G0917900 PROTEIN 6 202 - -
Lapu6g01637 202 MobiDBLite consensus disorder prediction 67 88 - -
Lapu6g01637 202 SMART ring_2 154 191 IPR001841 -
Lapu6g01637 202 Pfam Zinc finger, C3HC4 type (RING finger) 153 196 - -
Lapu6g01637 202 CDD RING-HC 154 191 - -
Lapu6g01637 202 SUPERFAMILY RING/U-box 149 199 - -
Lapu6g01637 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Lapu6g01637 202 ProSiteProfiles Zinc finger RING-type profile. 154 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01637 Lapu-Chr6 16227328 16228591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01637 19 202 C3H Transcription Factor Family AT4G22250 56.186 1.31e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01637 - - pvu:PHAVU_006G145000g 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01637 6 16227328 16228591 Lapu6g01637 6 16227328 16228591 ECH
Lapu3g00105 3 1319189 1319788 Lapu6g01637 6 16227328 16228591 PCT