Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01629 ATGTGCAAGCAAGCCATGGAGGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCAATGACGATGATGCCTTTGGTGACTTCCCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTCCAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAATAACAGCGATGATAACAACAACACTGGGGTAGGTTACTATTTCATGGAGAGTGGCCACCACAACCACCGCAACAACAACAATGGAAGCTCTTCCTCCTCTTCATCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTTGTGGCGAGGTTGGAAGAAGCGTGTGCTTCTGCGGTGACAATGGCTGGAGATGCAGCTGGATCGAGCTGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCCTACTGTGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAGCCCTTAAAAGAAGCCATGCTCTTCCTCCAAAGGATTGAGTGCCAGTTCAAAAATCTTACAGTTTCTTCCTCCGACTTTGCTTGTAACGAGGGTGGTGAAAGGAATGGATCATCTGAAGAGGATGTTGATCTACAGAGCATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGCAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAATCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTATTACGTGGATACTGTTCTGGCCAATCCATTTCCCATGGATATTTCCCATCCCATGCTCTAG 1116 0.4642 MCKQAMEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHPINPNPSNNTNNNANTNCLFIPNSSNSGTPSIMLDNNHNNSDDNNNTGVGYYFMESGHHNHRNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTVSSSDFACNEGGERNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVLANPFPMDISHPML* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01629 371 Gene3D - 278 340 - -
Lapu6g01629 371 SUPERFAMILY Homeodomain-like 275 351 IPR009057 -
Lapu6g01629 371 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Lapu6g01629 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Lapu6g01629 371 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Lapu6g01629 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Lapu6g01629 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Lapu6g01629 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Lapu6g01629 371 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Lapu6g01629 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 342 - -
Lapu6g01629 371 Pfam KNOX1 domain 117 156 IPR005540 GO:0003677|GO:0005634
Lapu6g01629 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Lapu6g01629 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Lapu6g01629 371 MobiDBLite consensus disorder prediction 99 117 - -
Lapu6g01629 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Lapu6g01629 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Lapu6g01629 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Lapu6g01629 371 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01629 Lapu-Chr6 16132446 16139975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01629 92 371 Homeobox Transcription Factor Family AT1G62360 76.207 8.77e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu6g01629 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01629 - - gmx:100805837 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01629 6 16132446 16139975 Lapu6g01629 6 16132446 16139975 ECH
Lapu3g00109 3 1375918 1380695 Lapu6g01629 6 16132446 16139975 PCT