Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01613 ATGGCCACTTTAACCATTCTCCTAGTGCTCTCAACATGCACCTTAGCTTCATCACTGAATAACAGAGATTCAACAAAGGAGTTCAATGCCCTCTCTCCTATTCCAAGCTATATCACCAAGAGTAGCCCTCAGAATATTGTCATGAACAAAATAGACTCATGTTGGCGGGCTAAAACAAATTGGGCTTCTAATCGCCAATCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCACAGGAGGAAAGTTTGGCGATGTATATGAAGTCACTGACCCTTCTGATGACCCTGTAGATCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACTTTCGCCAAGGACATGGTTATCACGCTGAAGAATGAGCTCATAATGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGGCTTGCATTACGATACAAGGTGTCAGCCATGTAATCATACATGGAATTAGCATTCATGATTGTAAACCGGATGAGGGTGGAATGGTTAGGAGCACTCCTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATTAGCATATTTGCTTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCCACTGCAGTCACCATCTCTAACAATTACTTCACCCACCACGACAAAGTGATGCTGCTAGGGCACAGCGATGAATACAGCGCGGATAAAATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTTTTAGTGAAGGCAACTATTTTACGGCTTCAGCAGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAAGTAGTGAAAAGTGGAATAATTGGAAATGGAGGAGTTTTGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGCATGGCCACCTCTTCCTTAGTCCTCTTGCTTTCATGTTTCATACTACACCTTGCATGTTCATCACAAAGTGCAGTCCTAAACAAGATAGACTCATGTCGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCCATTGGCTTTGGCAAAGATGCAATTGGAGGCAAGTATGGAGCAATATATAAAGTCACAGATCCCTCTGATAATCCCTCAAGTCCAAAACCTGGCACACTTCGTTATGGTGTGGTCCAAACACAACCCCTTTGGATAATTTTTGCCAAAGATATGGTTATTGAGCTCAAGAACGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCAAATGGACCTTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGTAAACCAAGCAAGGCTGGCCTTGTAATGAGCACCCCATCTCATGTTGGCCATCGCCAAGGCTCTGATGGAGATGGGATTAGCATATTTGCCTCCTCAAATGTTTGGATTGATCACTGTTTCTTGGCTCGTTGTGTTGATGGCTTGATTGATGTTATTCATGCCTCAACTGCCATTACCATTTCTAACAATTACTTTACTCAGCATGACAAAGTTATGCTATTAGGACACAGCGACGAATACACAGCAGATAAAATAATGAAAGTAACAATAGCCTTCAACCGATTTGCTAGTGGTCTAATTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGTGGCAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATAACCCTGCTACAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGACCCGAACTATTCACCTTCTCAATCTTTTACTGCTGCGCCTGCTTCATCGGTGCCCGCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTGTTGGTAAAGCATGTTAG 2073 0.4346 MATLTILLVLSTCTLASSLNNRDSTKEFNALSPIPSYITKSSPQNIVMNKIDSCWRAKTNWASNRQSLADCAIGFGKDATGGKFGDVYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFAKDMVITLKNELIMNSYKTIDGRGAKVEIANGACITIQGVSHVIIHGISIHDCKPDEGGMVRSTPEHVGYREGSDGDAISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADKMYAIGGSADPTIFSEGNYFTASADSAAKQVTKRESSEKWNNWKWRSFGDEFLNGAYFVPSGMATSSLVLLLSCFILHLACSSQSAVLNKIDSCRLAKSNWASNRQALADCAIGFGKDAIGGKYGAIYKVTDPSDNPSSPKPGTLRYGVVQTQPLWIIFAKDMVIELKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPSKAGLVMSTPSHVGHRQGSDGDGISIFASSNVWIDHCFLARCVDGLIDVIHASTAITISNNYFTQHDKVMLLGHSDEYTADKIMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEANYYVAPNNPATKQVTKREMKGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPSQSFTAAPASSVPAITLNAGPLTCVVGKAC* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01613 690 SUPERFAMILY Pectin lyase-like 364 689 IPR011050 -
Lapu6g01613 690 SMART amb_all 122 281 IPR002022 -
Lapu6g01613 690 SMART amb_all 417 614 IPR002022 -
Lapu6g01613 690 Gene3D - 48 254 IPR012334 -
Lapu6g01613 690 Gene3D - 255 325 IPR012334 -
Lapu6g01613 690 Gene3D - 343 683 IPR012334 -
Lapu6g01613 690 PANTHER PECTATE LYASE 18-RELATED 252 319 IPR045032 GO:0030570
Lapu6g01613 690 Pfam Pectate lyase 129 255 IPR002022 -
Lapu6g01613 690 Pfam Pectate lyase 424 608 IPR002022 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 425 441 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 661 684 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 366 383 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 591 610 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 631 655 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 389 414 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 489 510 IPR018082 -
Lapu6g01613 690 PRINTS Pollen allergen Amb family signature 569 588 IPR018082 -
Lapu6g01613 690 SUPERFAMILY Pectin lyase-like 48 320 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01613 Lapu-Chr6 16014534 16021193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01613 344 690 Polysaccharide Lyase AT1G11920 69.828 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01613 K01728 - gmx:100799106 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00117 3 1442063 1444172 Lapu6g01613 6 16014534 16021193 PCT