Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01611 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCGCAATTCCCTTCCAAACAGCCTTCCACTTCTTTCTCCAAACTCACCACCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGCCCCGCTGCCAAGGACGGCGAACACACCCGCAAAGTCCTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAACACCCTCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACGTTAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAACGAGCCAAAACCACTGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGCCGAGAACAAGAAGCTGAAGGAGATGCTAAGCCACGTGACCGGTAACTACACGGCCTTGCAGACGCATCTTATGACATTAATGCATCAGAACCAGCTCACAGAGAGCACAGAAAATGAGGTTGTTCAGGGAAAGGCCGAGGATAAAAGTCATGCTGTTGGTGGGGGAAAAGTTCCAAGGCAGTTCCTTGATGTAGGTCCCAGTGGCGCAGCCGAAGCAGATGATCAAGTGTCTGATTCTTCTTCCGATGAGAGAACACGATCGAGCACTCCTCAGAACAATAACATTGAAGTTGGAACAAGAGATGGTGCGAGAAATATTAATAGCAAAAGAGAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGGCTCCTAATAAGCTCCAGAAAGTTAACCCTTCCAATGCTATCGATCAGTCCACTACTGAAGCCACAATGAGAAAAGCTCGCGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATAAGCGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGAAACCCGTGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTAACAACATATGAAGGTACACATAACCATCCACTGCCACCTGCCGCTATGGCCATGGCATCAACCACTACAGCTGCTGCTAGCATGTTGCTGTCAGGGTCAATGTCCAGTGCGGATGGGATAATGAACCCAAATTTGCTAGCCAGAGCAATTCTTCCTTGCAATTCTAGCATGGCAACACTTTCAGCTTCGGCACCATTTCCAACTGTGACTTTGGACCTCACACACAACCCAAACCCATTGCAATTTCAAAGACCTGCTGCTCCATTCCAAGTACCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGGTCCGGAGCCACCCCGATTGCACAAGCACAAGCACTTTACAATCAATCAAAATTCTCTGGTCTTCAGCTATCTCAGGAAGTAGGATCTTCCCAGTTGGTCGCACAAGCTCCTAGACCACCCTTACAGCCTAGCCAGCAACCCTCATCGGCTGATACAGTCAGTGCCGCCGCCGCTGCTATCACCGCCGATCCAAACTTCACCGCCGTCCTCGCCGCCGCCATCTCCTCCATCATTGGCGGTGCTCATAATGCAAACAACAACACCAATAACAACAACAGCACAAGCAGGACTACCATTAGCAGCTTTTCAGGAAACTGA 1698 0.4953 MDKGWGLTLDTSSSQFPSKQPSTSFSKLTTDTMFPLLGFPVNLSRPAAKDGEHTRKVLGEVDFFSDRITKPTPSPSHDQHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNAENKKLKEMLSHVTGNYTALQTHLMTLMHQNQLTESTENEVVQGKAEDKSHAVGGGKVPRQFLDVGPSGAAEADDQVSDSSSDERTRSSTPQNNNIEVGTRDGARNINSKRELGREESPDSESQGWAPNKLQKVNPSNAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPAAPFQVPFLQGQPQNFGSGATPIAQAQALYNQSKFSGLQLSQEVGSSQLVAQAPRPPLQPSQQPSSADTVSAAAAAITADPNFTAVLAAAISSIIGGAHNANNNTNNNNSTSRTTISSFSGN* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01611 565 MobiDBLite consensus disorder prediction 248 263 - -
Lapu6g01611 565 FunFam probable WRKY transcription factor 31 294 371 - -
Lapu6g01611 565 MobiDBLite consensus disorder prediction 490 510 - -
Lapu6g01611 565 Pfam WRKY DNA -binding domain 311 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01611 565 MobiDBLite consensus disorder prediction 108 128 - -
Lapu6g01611 565 Gene3D WRKY domain 294 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g01611 565 MobiDBLite consensus disorder prediction 542 565 - -
Lapu6g01611 565 MobiDBLite consensus disorder prediction 266 293 - -
Lapu6g01611 565 SUPERFAMILY WRKY DNA-binding domain 302 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g01611 565 Coils Coil 126 160 - -
Lapu6g01611 565 SMART WRKY_cls 309 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g01611 565 MobiDBLite consensus disorder prediction 179 293 - -
Lapu6g01611 565 MobiDBLite consensus disorder prediction 227 246 - -
Lapu6g01611 565 MobiDBLite consensus disorder prediction 1 25 - -
Lapu6g01611 565 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 103 554 IPR044810 GO:0003700
Lapu6g01611 565 MobiDBLite consensus disorder prediction 7 25 - -
Lapu6g01611 565 ProSiteProfiles WRKY domain profile. 304 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01611 Lapu-Chr6 15994632 15997428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01611 1 552 WRKY Transcription Factor Family AT1G62300 51.741 2.53e-160 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g01611 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01611 - - pvu:PHAVU_006G147800g 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01611 6 15994632 15997428 Lapu6g01611 6 15994632 15997428 ECH
Lapu5g00621 5 5763225 5765877 Lapu6g01611 6 15994632 15997428 ECH
Lapu11g00250 11 5461552 5464606 Lapu6g01611 6 15994632 15997428 ECH