Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01609 ATGGAGTGGACTAGAGGCCACATGCTCGGCTGTGGTTCCACCGCGGCCGTCTACATCGCTGAGTCCGGCCGATCCGGTCGAGTGTTCGCCGTTAAGTCCGCGGAGCTCCACCGGTCGGAATTCCTCAAAAGGGAGGAGATGATTATTTCCACTCTGAACTCTCCTCATATTGTGGCGTATCAAGGTTCTGACACCACGTTTGAGAACGGTGTTTACTGGTTCAACATGTTCATGGAATATGCGCCTCACGGGACGCTGGCGGAGCGCTGTGGTGGCATGGAAGAAGCGGTGGTGGGATCCTGCACGCGCCAAATTCTGCAGGGGCTGCACTATCTCCACTCTAATGGGATAGTGCATTGCGACGTGAAGGGGCAGAATGTGTTGGTGACGGAGAAGGGGGTGAAAATTGCGGACTTGGGTTGTGCTCGGAGGGTGGGGGAGTTGTCGGCAATCGCCGGCACGCCGGCTTTCATGTCGCCGGAGGTGGCACGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACGGTGCTGGAGATGATCACGGGGAAGCCTCCGTGGCATGGCGGCGGCGACCCGGCGGAGGTGGTTTACAGGATTGGGTTCTCGGATGAGTTGCCGGAGATTCCTAGTTTTGTGTCCGAGCAGGGGAGAGACTTTTTGGGAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACAGTTTTGTTAAGGAATGCAGGGAATTGAAGTTGTTTTTGTTGGATTCAGACACCCCCACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAACTCAGCATGGAGCACGTGATTGTCCCTCTCCTGGGGACAGAATTCGTAGGTTGTTTTCGGATGAACCCCTTTGGGTATGGAACAGCGATGATGGTAATGATGATGAGCCATGGGTCACGGTGAGGAGCAATGAGTTCCATGAAGGATTATCCCTCCAAAAAACAGACACTACTTTTTGTAATATGGTTAGTGATGAGGAAATCGGTTCGGTTACTTTATGTGAACCCAAAATTGTAGTATCAACTGTAGTTGAATTGAGTAGAAGGAATGCTATTACTTGTGATGATTGTTATATTAGAGGCAGAAACTGTGATTGTCGCTGCAGCGAATCATTATTGTCAGTTTGTGTGTGTGTAGTGATTGTTCTCCATGGAAAATTTGATTCTCATGACATTGGAACTTTTATTTTTATCATGCATTGCTTTCTTTTCCTGCGCTCTCTGTCTCTCTTTAATTCAACTTTAGATGGACTGAACACTTTTGATTTTCATCAGTATAAAATAATATGGGATAATGTGTGTGCCACATAA 1365 0.4974 MEWTRGHMLGCGSTAAVYIAESGRSGRVFAVKSAELHRSEFLKREEMIISTLNSPHIVAYQGSDTTFENGVYWFNMFMEYAPHGTLAERCGGMEEAVVGSCTRQILQGLHYLHSNGIVHCDVKGQNVLVTEKGVKIADLGCARRVGELSAIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGGGDPAEVVYRIGFSDELPEIPSFVSEQGRDFLGKCLKRDPNERWSVEELLGHSFVKECRELKLFLLDSDTPTGVLERGFWDSLETTQHGARDCPSPGDRIRRLFSDEPLWVWNSDDGNDDEPWVTVRSNEFHEGLSLQKTDTTFCNMVSDEEIGSVTLCEPKIVVSTVVELSRRNAITCDDCYIRGRNCDCRCSESLLSVCVCVVIVLHGKFDSHDIGTFIFIMHCFLFLRSLSLFNSTLDGLNTFDFHQYKIIWDNVCAT* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01609 454 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01609 454 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Lapu6g01609 454 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lapu6g01609 454 Pfam Protein kinase domain 5 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01609 454 CDD STKc_MAPKKK 2 248 - -
Lapu6g01609 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Lapu6g01609 454 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 327 - -
Lapu6g01609 454 Gene3D Transferase(Phosphotransferase) domain 1 2 270 - -
Lapu6g01609 454 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01609 Lapu-Chr6 15969105 15970469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01609 1 276 MAP Kinase Kinase Kinase AT2G32510 52.759 1.33e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu6g01609 Pkinase 6.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01609 K20716 - gmx:100802174 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00622 5 5780621 5781793 Lapu6g01609 6 15969105 15970469 ECH
Lapu11g00249 11 5447598 5448665 Lapu6g01609 6 15969105 15970469 ECH
Lapu6g01609 6 15969105 15970469 Lapu6g01609 6 15969105 15970469 ECH
Lapu6g01609 6 15969105 15970469 Lapu3g00120 3 1463704 1464920 ECH