Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01602 ATGAAGCCTGAAGCTGCTGAGAGTGATCACAGCTCTCTCAAACGCTCCCCTCCTTCAACCATGTCTTCTTCTTCCTCCTCTCTCATCACCACCCTTGTTGATCATAATAATAACCCTTCGCACCCTCCTCAGTTGAGACCTCCTCGCCGTCGTTTTGCTTCTCATCACCTTCCTGAGATAAGCCTCAAAACTCCTATGGTTAGGCCTTATGTTCGATCAAAAATGCCCAGGCTTCGTTGGACACCAGATCTCCATCGCTGCTTCGTGCATGCAGTTCAAAGACTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTCTTACAGCTCATGAATATAAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGATGTACAGGAGCATGAGGCACGAGCAGATGAGTCAAGGTGGAAAGAAGAATGATGTGGCTCCGGAGTTTCTAGCTTCCACATTCTCAACTCTTGGCCCAAGGTATGGCCAACAGAATCCTCACCAAAGAAGCTGCACGGAAGAGCTTGTTCCCACCCATGCTCAATGGAATGATTATGAGGAAGGGTGTTACAGTGGAAAGCAAGGTGGTAAATCGATTATAGGCTGTAACGGCAATGAACAGAAGATGCACTCCTACATCATCTTCGAGGGTCTTCTCAATGGCCACACTGTCCAAGAGAATAAAATTGGTACTGAAAAGGTGTTGCTAGGGGGTGCCACCGGTTACGAAAGCGACCATGAAAGATTCCAAGACAGAACTACTGGCATAGGAGGAGGAGGAGAGAGAGTGGGTGAAGGCACACTGTCCTTATCAATGAGCTCCAGAGCTAGTTCACATTCATTCTTCAATCGCAGCCACACTGGTCCAGATGCCAATGATGTCTCTCTTGAGCTCACGCTCTCTTAG 903 0.4817 MKPEAAESDHSSLKRSPPSTMSSSSSSLITTLVDHNNNPSHPPQLRPPRRRFASHHLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNIKGLTISHVKSHLQMYRSMRHEQMSQGGKKNDVAPEFLASTFSTLGPRYGQQNPHQRSCTEELVPTHAQWNDYEEGCYSGKQGGKSIIGCNGNEQKMHSYIIFEGLLNGHTVQENKIGTEKVLLGGATGYESDHERFQDRTTGIGGGGERVGEGTLSLSMSSRASSHSFFNRSHTGPDANDVSLELTLS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01602 300 MobiDBLite consensus disorder prediction 12 40 - -
Lapu6g01602 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 41 164 IPR046955 GO:0003700
Lapu6g01602 300 Pfam Myb-like DNA-binding domain 78 128 IPR001005 -
Lapu6g01602 300 Gene3D - 75 133 - -
Lapu6g01602 300 MobiDBLite consensus disorder prediction 1 50 - -
Lapu6g01602 300 SUPERFAMILY Homeodomain-like 74 130 IPR009057 -
Lapu6g01602 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 76 129 IPR006447 GO:0003677
Lapu6g01602 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 132 IPR017930 -
Lapu6g01602 300 MobiDBLite consensus disorder prediction 278 300 - -
Lapu6g01602 300 FunFam Myb family transcription factor 74 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01602 Lapu-Chr6 15903940 15906933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01602 67 139 G2-like Transcription Factor Family AT2G42660 73.973 1.72e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu6g01602 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01602 - - pvu:PHAVU_006G149000g 481.485