Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01587 ATGATGCAGCAGCCAGGGCTCGGCATGGCTCCTCCCGCCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCCGCCGCCGCAGCAGCAACCGTACGTCATGATGCCGCAGCAGCCCCAAGCACCTCCTCCCATGTGGGCCCCTTCCTCCCAGCCTTCGTCGCAGCAGCAGCAGCAGCAGCCCACCAGCGTTGACGAGGTCCGGACCCTATGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTACCTCTACACCTGCTTCGCACCTACCGGCGAGGTTACATCTGTTAAAGTGATTCGAAATAAGCAAACTAGTCAATCAGAAGGTTATGGGTTTATCGAGTTTAATAGTCGTGCTGCAGCCGAGAGAATTCTTCAGACATATAATGGAGCTATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCCGGTGAAAGGCGGCATGATGATTCTCCAGATTACACCATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTTCAAGAGACATTTAGGGCTCGTTACAACTCAGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGGTATGGCTTCGTTAGGTTTGCAGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCAAAAGGAAAATTGACGTCTTATCAGAATTCTCAAGCTCAAGGCACGCAGAACGAGAATGATCCTAATAATACAACTATTTTTGTTGGCAATTTGGATGCTAATGTCTCTGATGATCATTTGAGGCAAGTTTTTAGTCAGTATGGAGAATTAGTTCATGTGAAGATTCCGGCCGGCAAGCGATGTGGTTTTGTCCAATTCGCTGACAGGAGCTGTGCTGAAGAGGCACTTCGGATGTTAAATGGGACCCTATTGGGTGGACAAAACGTTCGTCTGTCATGGGGTCGCAGTCCTTCAAACAAACAAGCTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGGATATTATGGGTATGCTCAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGACAGGATCCCAACGTCTATGGCAGTTATCCAGGGTATCCTAGTTATCAACCTCCTCAGCAACAGCAGCAAATAGGATATAGTTGA 1218 0.4885 MMQQPGLGMAPPAMGQQPPQQYQQPPPQQQPYVMMPQQPQAPPPMWAPSSQPSSQQQQQQPTSVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKGKLTSYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPSYQPPQQQQQIGYS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01587 405 MobiDBLite consensus disorder prediction 385 405 - -
Lapu6g01587 405 SUPERFAMILY RNA-binding domain, RBD 149 254 IPR035979 GO:0003676
Lapu6g01587 405 Gene3D - 247 352 IPR012677 -
Lapu6g01587 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 58 347 - -
Lapu6g01587 405 MobiDBLite consensus disorder prediction 391 405 - -
Lapu6g01587 405 Gene3D - 10 157 IPR012677 -
Lapu6g01587 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Lapu6g01587 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Lapu6g01587 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Lapu6g01587 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Lapu6g01587 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 343 IPR000504 GO:0003723
Lapu6g01587 405 FunFam Polyadenylate-binding protein RBP45C 153 244 - -
Lapu6g01587 405 CDD RRM1_SECp43_like 69 149 - -
Lapu6g01587 405 Gene3D - 160 236 IPR012677 -
Lapu6g01587 405 MobiDBLite consensus disorder prediction 232 270 - -
Lapu6g01587 405 CDD RRM2_SECp43_like 160 239 - -
Lapu6g01587 405 SMART rrm1_1 162 236 IPR000504 GO:0003723
Lapu6g01587 405 SMART rrm1_1 272 339 IPR000504 GO:0003723
Lapu6g01587 405 SMART rrm1_1 69 144 IPR000504 GO:0003723
Lapu6g01587 405 MobiDBLite consensus disorder prediction 235 270 - -
Lapu6g01587 405 SUPERFAMILY RNA-binding domain, RBD 260 368 IPR035979 GO:0003676
Lapu6g01587 405 MobiDBLite consensus disorder prediction 18 49 - -
Lapu6g01587 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Lapu6g01587 405 MobiDBLite consensus disorder prediction 1 65 - -
Lapu6g01587 405 FunFam Polyadenylate-binding protein RBP45 11 152 - -
Lapu6g01587 405 MobiDBLite consensus disorder prediction 50 65 - -
Lapu6g01587 405 FunFam Polyadenylate-binding protein RBP45C 245 376 - -
Lapu6g01587 405 SUPERFAMILY RNA-binding domain, RBD 37 148 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01587 Lapu-Chr6 15717126 15721570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01587 67 350 Eukaryotic Initiation Factors Gene Family AT2G23350 26.298 7.97e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01587 - - gmx:100801562 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01587 6 15717126 15721570 Lapu6g01587 6 15717126 15721570 ECH
Lapu3g00148 3 1700457 1705795 Lapu6g01587 6 15717126 15721570 PCT