Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01582 ATGAGTTGCTTCCCATGCTGCAAATCAGATACCAAATCAACCTCTAAGAAGGTAGTCTCCGGCAAAGTTTCCAAAGGAAGGAGAACATTCAAATCAGTAGCTGCGGCTGTGTCTCTTAAAACAGGCAGCAGCAGGCATAGACAAATAGACGCAGAGATAAGAAAATTTGGAACTGTCAAAAATGATGTCAAAGTATTCACATATGAACAACTTGTTGAAGCAACAAACAACTATAGTCCTGATTGCCTGGTGGGAGAAGGTGGATTCGGGAATGTTTACAAAGGATACATTAAAAGTGTTGGACAACCTGTAGCTGTGAAGGTACTGAACAGGGAAGGAGCACAAGGAACGCGCGAATTTTTTGCAGAAATTTTGATGTTAAGTATGGTGCAACACCCTAACCTTGTGAGGCTCGTTGGTTATTGTTCAGATGACCATCATAGGATTTTGGTTTACGAATTCATGGCCAATGGGAGTTTGGAAAATCACCTTCTAGACTTGGGCGAAGATAAGGAGCCTTTGGATTGGAAGATCAGGATGAAAATAGCCGAGGGAGCAGCAAGAGGACTTGAATATTTGCATAACAGTGATGATACACCTATTATATACCGTGATTTCAAATCATCTAATATACTGTTAGATGAAAATTTTACTCCAAAGCTCTCTGATTTTGGCCTTGCTAAGATTGGTCCTATAGATGGCCAGGACCATGTGTCAACCCGGGTGATGGGAACTTTTGGTTATTGTGCTCCAGAGTATGCTGCTACGGGTCAACTTAGCACAAAGTCGGATATTTATAGTTTTGGGGTTGTGTTTTTGGAAATAATCACGGGTAGGAGAGTATTTGACACTGCAAGAGCTACAGAAGAACAAAACTTGATTGATTGGGCACAACCTTTGTTTAAGGACAGAACGAAGTTTACTCTAATGGCTGATCCTTTGCTTAAAGGTCAGTTCCCTGTGAAGGGCCTATTTCAAGCCCTTGCGGTGGCAGCAATGTGTTTACAAGAGGAACCTGACACACGACCTTACATGGATGATGTTGTGACGGCTCTTACACATCTAGCAGTGCACAAAGTTGGAGAAAAAGACATAGCCGGTGAATCTATTACATGTGCTGGCCATGTTGAATCTTTCAGAGCTGCAAGTTCTGCGGGATCCGAAAGGGCGTAG 1173 0.4254 MSCFPCCKSDTKSTSKKVVSGKVSKGRRTFKSVAAAVSLKTGSSRHRQIDAEIRKFGTVKNDVKVFTYEQLVEATNNYSPDCLVGEGGFGNVYKGYIKSVGQPVAVKVLNREGAQGTREFFAEILMLSMVQHPNLVRLVGYCSDDHHRILVYEFMANGSLENHLLDLGEDKEPLDWKIRMKIAEGAARGLEYLHNSDDTPIIYRDFKSSNILLDENFTPKLSDFGLAKIGPIDGQDHVSTRVMGTFGYCAPEYAATGQLSTKSDIYSFGVVFLEIITGRRVFDTARATEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEPDTRPYMDDVVTALTHLAVHKVGEKDIAGESITCAGHVESFRAASSAGSERA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01582 390 PANTHER OS07G0668900 PROTEIN 3 361 - -
Lapu6g01582 390 Pfam Protein kinase domain 83 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01582 390 FunFam serine/threonine-protein kinase PBS1-like 43 154 - -
Lapu6g01582 390 SUPERFAMILY Protein kinase-like (PK-like) 62 351 IPR011009 -
Lapu6g01582 390 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Lapu6g01582 390 FunFam Serine/threonine-protein kinase PBS1 155 369 - -
Lapu6g01582 390 Gene3D Phosphorylase Kinase; domain 1 19 154 - -
Lapu6g01582 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lapu6g01582 390 CDD STKc_IRAK 84 355 - -
Lapu6g01582 390 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lapu6g01582 390 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01582 Lapu-Chr6 15686260 15688352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01582 1 361 Glycoside Hydrolase AT3G07070 52.304 1.24e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lapu6g01582 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01582 - - gmx:100305361 650.588