Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01577 ATGGAAAACTTCACCTCTTTGTCTTCTTCTTCCTTGTCACCCATTCCATCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTCCGAAGACTCCTGCAGTGTATGCCTGGAGCCCTTCACCATAGACGAACCATCCACTATTACCAGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAGTGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAAGATGAAAAACGCATGAGATCGAGAAACACGACTAATTTTCGTGCCCCCCTTGAACAGTTTAATGATCACTCTGATGATGACTCATTCTCAGATGACTCTGATTCTGATGACCATATTATGAGACGCCTAGTTGCTGCTGCAAATAGAGCTCGCCTTGTTCAGAGACAGGAAAGGAATAGATCACCTGGAGCTGGTCCATCAGATGTTCTTGATGTTAACTCTTCCGTACATGTATCCGGTGTGCAAACAACACTTGCAAGTTCACCATCTTGGGGCACTTTGTCTGCCTCTGATGTAACATCTACTGTTAATAGTCAACCTCCGGCAATAAATACTACACCTGAGAGCGCAAGCAGACCAAACACTTACGAGATATTTTCCTTCCCAGAAACCTTCAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCAATTTCAAAAGGTACACGGGGCCTTAAAGAGAAGTTACTTGCCCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTTCAAAACGGTCCAGTTCTCCTATCATTCCTGTCCACAGTGAGGGAACTTCAGACTTCCCAAAAGAAGGGAAGAGGTATGTTGGAGAGAATGGTATTGGGGGTTCTCCTAGTAAAGAGAGTGAAGGTGCAGTTCATGATGTTAGTTCAGATGTTCCCCCATTTGTCACTAACGTGCAATCTTTTCGAATGGAAATTCCTCCATTTGTTCAGGTTATCTGGTCATGTAATTTCTAG 1092 0.4405 MENFTSLSSSSLSPIPSISAPSSSAPFDDSSEDSCSVCLEPFTIDEPSTITSCKHEYHLHCILEWSQRSQECPICWQSLALKDPASQELLAAVEDEKRMRSRNTTNFRAPLEQFNDHSDDDSFSDDSDSDDHIMRRLVAAANRARLVQRQERNRSPGAGPSDVLDVNSSVHVSGVQTTLASSPSWGTLSASDVTSTVNSQPPAINTTPESASRPNTYEIFSFPETFKSKFSAASTRYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSKRSSSPIIPVHSEGTSDFPKEGKRYVGENGIGGSPSKESEGAVHDVSSDVPPFVTNVQSFRMEIPPFVQVIWSCNF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01577 363 SUPERFAMILY RING/U-box 27 82 - -
Lapu6g01577 363 MobiDBLite consensus disorder prediction 180 215 - -
Lapu6g01577 363 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 24 84 - -
Lapu6g01577 363 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g01577 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Lapu6g01577 363 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Lapu6g01577 363 FunFam E3 ubiquitin-protein ligase RHF1A 20 87 - -
Lapu6g01577 363 Pfam Ring finger domain 33 75 IPR001841 -
Lapu6g01577 363 SMART ring_2 35 75 IPR001841 -
Lapu6g01577 363 MobiDBLite consensus disorder prediction 101 128 - -
Lapu6g01577 363 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01577 Lapu-Chr6 15608464 15611555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01577 28 83 C3H Transcription Factor Family AT5G38895 42.857 6.51e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01577 K19043 - gmx:100805449 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01577 6 15608464 15611555 Lapu6g01577 6 15608464 15611555 ECH