Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01571 ATGGATCAAAAGAAGCATGGTAAAGCAGCAGAAAAGAAGCATGGTAAAGCAGCAGAAGAAGGACGCGGCAAGAACAAAAAGCAATCCAACCCCATGATGGCTCCTCCTCCCAGTCCTCTAGCTCTCACTATTGGCCCTTCTGACCCTTCATCCTACTCTCTGCCACCAAAAGAACTCTTGGAGGAGCAACTCAACAACTTCTGGGAAAAACAGCGCCAGGAAGTTCAGGAGACCAGTGATTCCAGGAATCACAGCTTGCCTTTGGCTAGGATTAAGAGGATAATGAAGGCTGATGGGGATGTGAAAATGGTATCAGCTGAGGCTCCTGTGCTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAACTCACAATGAGGGCATGGGCCAATGCTGAGGAGAACAAAAGGAGGACACTCAGTAAGAGTGACATTGCATCTGCAATGTCAAAGTCTGATATGTATGATTTTCTTGTTGACATTGTCCCCAGGGAAGACACAAGGGATCGTCGAGTGGTTGCAGCCATACCAGGAACAGGCCCACAATATGGTGCTCCAACAATGCTCATGGGAATGCCCATTCTGGACCAAAATCATCCTGAGCTGCAGACCAATCCTTCTCCAGCTCCAATGTTGCCCAACCCAGAACAACAGAACAACCATTCTCCTAATTCAGATGATTGA 681 0.4743 MDQKKHGKAAEKKHGKAAEEGRGKNKKQSNPMMAPPPSPLALTIGPSDPSSYSLPPKELLEEQLNNFWEKQRQEVQETSDSRNHSLPLARIKRIMKADGDVKMVSAEAPVLFAKACEMFIMELTMRAWANAEENKRRTLSKSDIASAMSKSDMYDFLVDIVPREDTRDRRVVAAIPGTGPQYGAPTMLMGMPILDQNHPELQTNPSPAPMLPNPEQQNNHSPNSDD* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01571 226 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g01571 226 FunFam Nuclear transcription factor Y subunit gamma 54 163 - -
Lapu6g01571 226 MobiDBLite consensus disorder prediction 194 226 - -
Lapu6g01571 226 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 37 204 - -
Lapu6g01571 226 Pfam Core histone H2A/H2B/H3/H4 35 148 IPR007125 GO:0003677
Lapu6g01571 226 Gene3D Histone, subunit A 55 163 IPR009072 GO:0046982
Lapu6g01571 226 MobiDBLite consensus disorder prediction 1 55 - -
Lapu6g01571 226 SUPERFAMILY Histone-fold 59 157 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01571 Lapu-Chr6 15566338 15567084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01571 1 192 CCAAT-HAP5 Transcription Factor Family AT1G08970 46.009 3.09e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu6g01571 CBFD_NFYB_HMF 1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01571 K08066 - var:108342662 229.565