Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01570 ATGGATCCAACCCAGCATGGTCAAGCAGGAAGAAGAATTGCTCCAGCTCCAGAAGAAGAAGCACATGACGAGAACCAACATCAATCCAACCCCATTGCACCCAATACCAATCCTCCAACTCAGACCACTGGTCTTCCTGTACCTTCACCCTATCCTGGAGGGCATCTTTATCGTCCCCAATGCATGTACCAGCTGCAGCAAGAACAACTTCAGCAACGGGTGAACACCTTCTGGGCAAGGCAGATGCAGGCAATTGAGGAGAGCACTGATTTGAAGAGTCACAGCTTGCCTCTGGCGAGGATCAAGAAGATCATGAAGTCTGATGAGGATGTGAAGATGGTGTCAACTGAGGCTACTATGCTGTTAGCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAGGGCTTGGGCTAACGTTGAGGATGATAAAAGGAAGATAATTCAGAAGACTGATGTTGCATCTGCAATCTCAATGAGTGATATGTTTGATTTTCTTGTTGATATTGTTCCCAGGGATGACACAATCACAATGGGACATCAAGTGCTTCCAGGCATTGCTCCTGCACCAAATCAGAATGCTCCTTACCCTTATATGTCACTTCCTCAGCATGTTGCAGGCCCACCACCACCATATGCTGCTCCACCTCATGCTCATCATGGGAATGCCCCTTCTTCATCAAAATCCTCATCCGCTGCAAATCCGTCCTGTTCCAACTCCAACCCCACCCCAGATGAAGAAGACAGCGGTTGCTTTTTGCAACCATTTGAGGATAACTCCAAGGTTGCTTAG 795 0.478 MDPTQHGQAGRRIAPAPEEEAHDENQHQSNPIAPNTNPPTQTTGLPVPSPYPGGHLYRPQCMYQLQQEQLQQRVNTFWARQMQAIEESTDLKSHSLPLARIKKIMKSDEDVKMVSTEATMLLAKACELFIMELTMRAWANVEDDKRKIIQKTDVASAISMSDMFDFLVDIVPRDDTITMGHQVLPGIAPAPNQNAPYPYMSLPQHVAGPPPPYAAPPHAHHGNAPSSSKSSSAANPSCSNSNPTPDEEDSGCFLQPFEDNSKVA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01570 264 MobiDBLite consensus disorder prediction 1 53 - -
Lapu6g01570 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 52 224 - -
Lapu6g01570 264 FunFam Nuclear transcription factor Y subunit gamma 62 173 - -
Lapu6g01570 264 Gene3D Histone, subunit A 59 173 IPR009072 GO:0046982
Lapu6g01570 264 SUPERFAMILY Histone-fold 63 167 IPR009072 GO:0046982
Lapu6g01570 264 MobiDBLite consensus disorder prediction 208 264 - -
Lapu6g01570 264 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 158 IPR003958 -
Lapu6g01570 264 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01570 Lapu-Chr6 15545356 15546291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01570 74 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 56.693 5.63e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu6g01570 CBFD_NFYB_HMF 5.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01570 K08066 - vum:124832126 226.483